Analysis of interatomic Contacts of Structural Units in PDB entry:
3VU3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VU3 entry

There are 7 chains in PDB entry 3VU3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27ALA 753
C
 SER 6VAL 68
D
 LEU 7SER 69
E
 GLN 5ARG 66
F
 GLN 5PRO 67
G
 GLN 5PRO 67
H
 SER 6VAL 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3VU3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 57Right-handed alpha
Helix 2
2
A
62 68Right-handed alpha
Helix 3
3
A
69 72Right-handed 310
Helix 4
4
A
107 119Right-handed alpha
Helix 5
5
A
150 154Right-handed 310
Helix 6
6
A
210 212Right-handed 310
Helix 7
7
A
213 222Right-handed alpha
Helix 8
8
A
236 246Right-handed alpha
Helix 9
9
A
249 258Right-handed alpha
Helix 10
10
A
259 262Right-handed 310
Helix 11
11
A
265 269Right-handed 310
Helix 12
12
A
303 314Right-handed alpha
Helix 13
13
A
316 328Right-handed alpha
Helix 14
14
A
344 346Right-handed 310
Helix 15
15
A
381 386Right-handed alpha
Helix 16
16
A
407 423Right-handed alpha
Helix 17
17
A
427 435Right-handed 310
Helix 18
18
A
498 502Right-handed 310
Helix 19
19
A
505 515Right-handed alpha
Helix 20
20
A
516 532Right-handed alpha
Helix 21
21
A
536 549Right-handed alpha
Helix 22
22
A
551 563Right-handed alpha
Helix 23
23
A
567 572Right-handed alpha
Helix 24
24
A
585 589Right-handed 310
Helix 25
25
A
612 626Right-handed alpha
Helix 26
26
A
658 662Right-handed 310
Helix 27
27
A
671 676Right-handed alpha
Helix 28
28
A
678 691Right-handed alpha
Helix 29
29
A
700 707Right-handed 310
Helix 30
30
A
725 738Right-handed alpha
Helix 31
31
A
741 749Right-handed 310
Helix 32
32
C
7 18Right-handed alpha
Helix 33
33
D
8 18Right-handed alpha
Helix 34
34
E
7 18Right-handed alpha
Helix 35
35
F
7 18Right-handed alpha
Helix 36
36
G
7 18Right-handed alpha
Helix 37
37
H
7 18Right-handed alpha
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There are 4 sheets in PDB entry 3VU3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
277 280anti-parallel
Strand 3
A
286 295anti-parallel
Strand 4
A
333 342anti-parallel
Strand 5
A
368 377anti-parallel
Strand 6
A
131 140anti-parallel
Strand 7
A
160 167anti-parallel
Strand 8
A
184 191anti-parallel
Strand 9
A
194 201anti-parallel
Strand 10
A
271 272anti-parallel
Strand 11
A
286 295anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 653first strand
Strand 2
A
629 634parallel
Strand 3
A
602 606parallel
Strand 4
A
664 667parallel
Strand 5
A
695 698parallel
Strand 6
A
718 721parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
647 650anti-parallel
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There are 31 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 26first strand
Strand 2
C
31 39anti-parallel
Strand 3
C
43 47anti-parallel
Strand 4
C
51 55anti-parallel
Strand 5
H
59 64anti-parallel
Strand 6
H
21 26anti-parallel
Strand 7
H
31 39anti-parallel
Strand 8
H
43 47anti-parallel
Strand 9
H
51 55anti-parallel
Strand 10
G
59 64anti-parallel
Strand 11
G
22 26anti-parallel
Strand 12
G
31 39anti-parallel
Strand 13
G
43 47anti-parallel
Strand 14
G
51 55anti-parallel
Strand 15
F
59 64anti-parallel
Strand 16
F
22 26anti-parallel
Strand 17
F
31 39anti-parallel
Strand 18
F
43 47anti-parallel
Strand 19
F
51 55anti-parallel
Strand 20
E
59 64anti-parallel
Strand 21
E
22 26anti-parallel
Strand 22
E
31 39anti-parallel
Strand 23
E
43 47anti-parallel
Strand 24
E
51 55anti-parallel
Strand 25
D
59 64anti-parallel
Strand 26
D
22 26anti-parallel
Strand 27
D
31 39anti-parallel
Strand 28
D
43 47anti-parallel
Strand 29
D
52 55anti-parallel
Strand 30
C
59 64anti-parallel
Strand 31
C
21 26anti-parallel
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