Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUE entry

There is 1 chain in PDB entry 3VUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 81VAL 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3VUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 114Right-handed alpha
Helix 2
2
A
193 212Right-handed alpha
Helix 3
3
A
235 238Right-handed 310
Helix 4
4
A
239 248Right-handed alpha
Helix 5
5
A
275 281Right-handed 310
Helix 6
6
A
283 285Right-handed 310
Helix 7
7
A
286 290Right-handed alpha
Helix 8
8
A
307 315Right-handed alpha
Helix 9
9
A
322 331Right-handed alpha
Helix 10
10
A
376 392Right-handed alpha
Helix 11
11
A
410 413Right-handed 310
Helix 12
12
A
414 426Right-handed alpha
Helix 13
13
A
439 453Right-handed alpha
Helix 14
14
A
464 475Right-handed alpha
Helix 15
15
A
489 497Right-handed alpha
Helix 16
16
A
507 513Right-handed alpha
Helix 17
17
A
533 551Right-handed alpha
Helix 18
18
A
553 566Right-handed alpha
Helix 19
19
A
570 583Right-handed alpha
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There are 4 sheets in PDB entry 3VUE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 143first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
156 157anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 143first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
84 88parallel
Strand 6
A
228 233parallel
Strand 7
A
258 263parallel
Strand 8
A
317 320parallel
Strand 9
A
349 350parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
291 294anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
431 435parallel
Strand 3
A
402 406parallel
Strand 4
A
477 480parallel
Strand 5
A
501 503parallel
Strand 6
A
519 521parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il