Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUF entry

There is 1 chain in PDB entry 3VUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 81VAL 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3VUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 114Right-handed alpha
Helix 2
2
A
167 171Right-handed 310
Helix 3
3
A
193 208Right-handed alpha
Helix 4
4
A
235 237Right-handed 310
Helix 5
5
A
238 248Right-handed alpha
Helix 6
6
A
249 252Right-handed 310
Helix 7
7
A
273 281Right-handed 310
Helix 8
8
A
283 290Right-handed alpha
Helix 9
9
A
307 315Right-handed alpha
Helix 10
10
A
322 332Right-handed alpha
Helix 11
11
A
376 392Right-handed alpha
Helix 12
12
A
410 413Right-handed 310
Helix 13
13
A
414 426Right-handed alpha
Helix 14
14
A
440 453Right-handed alpha
Helix 15
15
A
464 475Right-handed alpha
Helix 16
16
A
489 497Right-handed alpha
Helix 17
17
A
507 513Right-handed alpha
Helix 18
18
A
533 551Right-handed alpha
Helix 19
19
A
553 565Right-handed alpha
Helix 20
20
A
570 584Right-handed alpha
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There are 3 sheets in PDB entry 3VUF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 142first strand
Strand 2
A
147 157anti-parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
84 88parallel
Strand 6
A
228 233parallel
Strand 7
A
258 263parallel
Strand 8
A
317 320parallel
Strand 9
A
349 350parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
291 294anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
431 435parallel
Strand 3
A
402 406parallel
Strand 4
A
477 480parallel
Strand 5
A
501 503parallel
Strand 6
A
519 521parallel
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