Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUI entry

There are 2 chains in PDB entry 3VUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7GLU 364
F
 PRO 554PHE 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3VUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 80Right-handed alpha
Helix 2
2
A
124 144Right-handed alpha
Helix 3
3
A
153 155Right-handed 310
Helix 4
4
A
183 187Right-handed 310
Helix 5
5
A
188 192Right-handed 310
Helix 6
6
A
193 198Right-handed alpha
Helix 7
7
A
205 221Right-handed alpha
Helix 8
8
A
231 242Right-handed alpha
Helix 9
9
A
245 250Right-handed alpha
Helix 10
10
A
253 263Right-handed alpha
Helix 11
11
A
270 275Right-handed alpha
Helix 12
12
A
276 280Right-handed 310
Helix 13
13
A
290 302Right-handed alpha
Helix 14
14
A
305 309Right-handed 310
Helix 15
15
A
311 318Right-handed alpha
Helix 16
16
A
318 323Right-handed alpha
Helix 17
17
A
326 331Right-handed alpha
Helix 18
18
A
348 364Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3VUI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
18 23anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 34first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
88 92anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
157 159anti-parallel
Strand 3
A
165 167anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il