Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUO entry

There is 1 chain in PDB entry 3VUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 1196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3VUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 58Right-handed 310
Helix 2
2
A
71 89Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
187 192Right-handed 310
Helix 5
5
A
217 235Right-handed alpha
Helix 6
6
A
262 269Right-handed alpha
Helix 7
7
A
271 276Right-handed 310
Helix 8
8
A
285 305Right-handed alpha
Helix 9
9
A
313 325Right-handed alpha
Helix 10
10
A
327 333Right-handed alpha
Helix 11
11
A
335 344Right-handed alpha
Helix 12
12
A
354 359Right-handed alpha
Helix 13
13
A
379 384Right-handed alpha
Helix 14
14
A
389 395Right-handed 310
Helix 15
15
A
429 434Right-handed alpha
Helix 16
16
A
458 463Right-handed alpha
Helix 17
17
A
499 506Right-handed alpha
Helix 18
18
A
519 525Right-handed alpha
Helix 19
19
A
536 546Right-handed alpha
Helix 20
20
A
554 574Right-handed alpha
Helix 21
21
A
591 597Right-handed alpha
Helix 22
22
A
604 613Right-handed alpha
Helix 23
23
A
614 618Right-handed 310
Helix 24
24
A
642 676Right-handed alpha
Helix 25
25
A
676 707Right-handed alpha
Helix 26
26
A
715 759Right-handed alpha
Helix 27
27
A
760 786Right-handed alpha
Helix 28
28
A
790 801Right-handed alpha
Helix 29
29
A
804 808Right-handed 310
Helix 30
30
A
812 819Right-handed alpha
Helix 31
31
A
822 832Right-handed alpha
Helix 32
32
A
891 895Right-handed 310
Helix 33
33
A
1024 1037Right-handed alpha
Helix 34
34
A
1137 1141Right-handed 310
Helix 35
35
A
1186 1190Right-handed 310
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There are 15 sheets in PDB entry 3VUO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
169 172parallel
Strand 5
A
199 202parallel
Strand 6
A
182 185anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
164 166anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
363 365anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
424 425anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 377anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 418first strand
Strand 2
A
401 406anti-parallel
Strand 3
A
491 495parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 517first strand
Strand 2
A
531 533parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 581first strand
Strand 2
A
584 589anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 852first strand
Strand 2
A
835 844anti-parallel
Strand 3
A
1011 1019anti-parallel
Strand 4
A
875 879anti-parallel
Strand 5
A
867 870anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 852first strand
Strand 2
A
835 844anti-parallel
Strand 3
A
1011 1019anti-parallel
Strand 4
A
901 909anti-parallel
Strand 5
A
963 970anti-parallel
Strand 6
A
975 980anti-parallel
Strand 7
A
983 989anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 862first strand
Strand 2
A
886 889anti-parallel
Strand 3
A
1001 1004anti-parallel
Strand 4
A
917 923anti-parallel
Strand 5
A
928 934anti-parallel
Strand 6
A
937 943anti-parallel
Strand 7
A
949 954anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1059first strand
Strand 2
A
1192 1195anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1071first strand
Strand 2
A
1076 1080anti-parallel
Strand 3
A
1132 1135anti-parallel
Strand 4
A
1120 1125anti-parallel
Strand 5
A
1109 1116anti-parallel
Strand 6
A
1093 1097anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1071first strand
Strand 2
A
1076 1080anti-parallel
Strand 3
A
1132 1135anti-parallel
Strand 4
A
1120 1125anti-parallel
Strand 5
A
1109 1116anti-parallel
Strand 6
A
1143 1148anti-parallel
Strand 7
A
1156 1160anti-parallel
Strand 8
A
1163 1164anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1166 1167first strand
Strand 2
A
1177 1178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il