Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUS entry

There are 2 chains in PDB entry 3VUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 42GLN 309
B
 PRO 43VAL 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3VUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 67Right-handed 310
Helix 2
2
A
71 84Right-handed alpha
Helix 3
3
A
90 99Right-handed alpha
Helix 4
4
A
117 132Right-handed alpha
Helix 5
5
A
140 145Right-handed alpha
Helix 6
6
A
160 164Right-handed 310
Helix 7
7
A
166 176Right-handed alpha
Helix 8
8
A
202 206Right-handed 310
Helix 9
9
A
218 241Right-handed alpha
Helix 10
10
A
251 254Right-handed 310
Helix 11
11
A
256 266Right-handed alpha
Helix 12
12
A
297 307Right-handed alpha
Helix 13
13
B
71 84Right-handed alpha
Helix 14
14
B
90 99Right-handed alpha
Helix 15
15
B
117 123Right-handed alpha
Helix 16
16
B
124 132Right-handed alpha
Helix 17
17
B
140 145Right-handed alpha
Helix 18
18
B
160 164Right-handed 310
Helix 19
19
B
166 176Right-handed alpha
Helix 20
20
B
202 206Right-handed 310
Helix 21
21
B
218 241Right-handed alpha
Helix 22
22
B
251 254Right-handed 310
Helix 23
23
B
256 266Right-handed alpha
Helix 24
24
B
297 307Right-handed alpha
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There are 12 sheets in PDB entry 3VUS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
108 115parallel
Strand 3
A
48 54parallel
Strand 4
A
279 280anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
135 139parallel
Strand 3
A
108 115parallel
Strand 4
A
48 54parallel
Strand 5
A
290 291parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
69 70parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
270 272parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
108 115parallel
Strand 3
B
48 54parallel
Strand 4
B
279 280anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
135 139parallel
Strand 3
B
108 115parallel
Strand 4
B
48 54parallel
Strand 5
B
290 291parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
69 70parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
157 159anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
270 272parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il