Analysis of interatomic Contacts of Structural Units in PDB entry:
3VUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VUT entry

There are 2 chains in PDB entry 3VUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 142MET 388
B
 MET 79ARG 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 152Right-handed alpha
Helix 2
2
A
185 192Right-handed alpha
Helix 3
3
A
201 221Right-handed alpha
Helix 4
4
A
231 233Right-handed 310
Helix 5
5
A
287 302Right-handed alpha
Helix 6
6
A
317 321Right-handed 310
Helix 7
7
A
337 348Right-handed alpha
Helix 8
8
A
357 363Right-handed alpha
Helix 9
9
A
366 371Right-handed alpha
Helix 10
10
A
377 386Right-handed alpha
Helix 11
11
B
139 149Right-handed alpha
Helix 12
12
B
151 157Right-handed alpha
Helix 13
13
B
185 189Right-handed alpha
Helix 14
14
B
201 222Right-handed alpha
Helix 15
15
B
250 255Right-handed alpha
Helix 16
16
B
287 302Right-handed alpha
Helix 17
17
B
337 348Right-handed alpha
Helix 18
18
B
364 370Right-handed alpha
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There are 4 sheets in PDB entry 3VUT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
235 237anti-parallel
Strand 3
A
243 245anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
92 94anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
118 121anti-parallel
Strand 3
B
126 130anti-parallel
Strand 4
B
176 178anti-parallel
Strand 5
B
164 167anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il