Analysis of interatomic Contacts of Structural Units in PDB entry:
3VV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VV3 entry

There are 2 chains in PDB entry 3VV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PRO 329
B
 SER 1PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
103 114Right-handed alpha
Helix 5
5
A
144 161Right-handed alpha
Helix 6
6
A
178 191Right-handed alpha
Helix 7
7
A
267 284Right-handed alpha
Helix 8
8
A
290 301Right-handed alpha
Helix 9
9
A
319 327Right-handed alpha
Helix 10
10
B
7 11Right-handed 310
Helix 11
11
B
29 35Right-handed alpha
Helix 12
12
B
59 63Right-handed 310
Helix 13
13
B
103 114Right-handed alpha
Helix 14
14
B
144 161Right-handed alpha
Helix 15
15
B
178 191Right-handed alpha
Helix 16
16
B
267 286Right-handed alpha
Helix 17
17
B
290 301Right-handed alpha
Helix 18
18
B
319 328Right-handed alpha
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There are 6 sheets in PDB entry 3VV3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
130 135parallel
Strand 3
A
44 49parallel
Strand 4
A
165 170parallel
Strand 5
A
194 198parallel
Strand 6
A
221 227parallel
Strand 7
A
246 249parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
261 265anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
316 317anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
130 135parallel
Strand 3
B
44 49parallel
Strand 4
B
165 170parallel
Strand 5
B
194 198parallel
Strand 6
B
221 227parallel
Strand 7
B
246 249parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 257first strand
Strand 2
B
261 265anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
316 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il