Analysis of interatomic Contacts of Structural Units in PDB entry:
3VV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VV8 entry

There is 1 chain in PDB entry 3VV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -1ASN 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3VV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 3Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
135 143Right-handed alpha
Helix 5
5
A
180 182Right-handed 310
Helix 6
6
A
216 222Right-handed 310
Helix 7
7
A
238 252Right-handed alpha
Helix 8
8
A
258 263Right-handed alpha
Helix 9
9
A
301 305Right-handed alpha
Helix 10
10
A
334 339Right-handed alpha
Helix 11
11
A
347 349Right-handed 310
Helix 12
12
A
378 383Right-handed 310
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There are 5 sheets in PDB entry 3VV8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
14 20anti-parallel
Strand 4
A
6 9anti-parallel
Strand 5
A
169 176anti-parallel
Strand 6
A
150 154anti-parallel
Strand 7
A
341 346anti-parallel
Strand 8
A
351 357anti-parallel
Strand 9
A
184 192anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 70first strand
Strand 2
A
75 86anti-parallel
Strand 3
A
95 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
117 120anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
14 20anti-parallel
Strand 8
A
6 9anti-parallel
Strand 9
A
169 176anti-parallel
Strand 10
A
150 154anti-parallel
Strand 11
A
341 346anti-parallel
Strand 12
A
351 357anti-parallel
Strand 13
A
184 192anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
283 288anti-parallel
Strand 4
A
294 300anti-parallel
Strand 5
A
369 375anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
331 333parallel
Strand 3
A
234 237anti-parallel
Strand 4
A
324 327parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
321 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il