Analysis of interatomic Contacts of Structural Units in PDB entry:
3VVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VVC entry

There is 1 chain in PDB entry 3VVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0TYR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3VVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
85 92Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
101 114Right-handed alpha
Helix 7
7
A
126 128Right-handed 310
Helix 8
8
A
132 152Right-handed alpha
Helix 9
9
A
174 185Right-handed alpha
Helix 10
10
A
201 216Right-handed alpha
Helix 11
11
A
231 242Right-handed alpha
Helix 12
12
A
265 272Right-handed alpha
Helix 13
13
A
316 326Right-handed alpha
Helix 14
14
A
327 337Right-handed alpha
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There are 4 sheets in PDB entry 3VVC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
31 36parallel
Strand 3
A
6 10parallel
Strand 4
A
76 79parallel
Strand 5
A
118 124parallel
Strand 6
A
158 164parallel
Strand 7
A
221 224parallel
Strand 8
A
278 281anti-parallel
Strand 9
A
273 274anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
248 250parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
228 230anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
307 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il