Analysis of interatomic Contacts of Structural Units in PDB entry:
3VVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VVD entry

There are 2 chains in PDB entry 3VVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4LYS 236
B
 GLY -4LYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3VVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
36 49Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
62 70Right-handed alpha
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
A
112 116Right-handed 310
Helix 7
7
A
126 134Right-handed alpha
Helix 8
8
A
146 157Right-handed alpha
Helix 9
9
A
166 176Right-handed alpha
Helix 10
10
A
201 218Right-handed alpha
Helix 11
11
A
219 230Right-handed alpha
Helix 12
12
B
4 12Right-handed alpha
Helix 13
13
B
36 50Right-handed alpha
Helix 14
14
B
59 61Right-handed 310
Helix 15
15
B
62 70Right-handed alpha
Helix 16
16
B
82 88Right-handed alpha
Helix 17
17
B
112 116Right-handed 310
Helix 18
18
B
126 135Right-handed alpha
Helix 19
19
B
146 156Right-handed alpha
Helix 20
20
B
166 176Right-handed alpha
Helix 21
21
B
201 219Right-handed alpha
Helix 22
22
B
219 230Right-handed alpha
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There are 4 sheets in PDB entry 3VVD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
13 18parallel
Strand 3
A
74 75parallel
Strand 4
A
182 198anti-parallel
Strand 5
A
89 105anti-parallel
Strand 6
A
161 165anti-parallel
Strand 7
A
119 123parallel
Strand 8
A
140 144parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
26 28anti-parallel
Strand 3
A
34 35anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
13 18parallel
Strand 3
B
74 80parallel
Strand 4
B
182 198anti-parallel
Strand 5
B
89 105anti-parallel
Strand 6
B
161 165anti-parallel
Strand 7
B
119 123parallel
Strand 8
B
140 144parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
34 35anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il