Analysis of interatomic Contacts of Structural Units in PDB entry:
3VVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VVM entry

There are 2 chains in PDB entry 3VVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 374
B
 MET 1ALA 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3VVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
114 118Right-handed 310
Helix 2
2
A
122 137Right-handed alpha
Helix 3
3
A
149 162Right-handed alpha
Helix 4
4
A
179 195Right-handed alpha
Helix 5
5
A
199 203Right-handed 310
Helix 6
6
A
210 226Right-handed alpha
Helix 7
7
A
227 236Right-handed alpha
Helix 8
8
A
255 270Right-handed alpha
Helix 9
9
A
273 287Right-handed alpha
Helix 10
10
A
288 296Right-handed 310
Helix 11
11
A
297 306Right-handed alpha
Helix 12
12
A
323 337Right-handed alpha
Helix 13
13
A
350 352Right-handed 310
Helix 14
14
A
353 358Right-handed alpha
Helix 15
15
A
358 374Right-handed alpha
Helix 16
16
B
114 118Right-handed 310
Helix 17
17
B
122 137Right-handed alpha
Helix 18
18
B
149 162Right-handed alpha
Helix 19
19
B
179 195Right-handed alpha
Helix 20
20
B
196 203Right-handed 310
Helix 21
21
B
210 226Right-handed alpha
Helix 22
22
B
227 236Right-handed alpha
Helix 23
23
B
255 271Right-handed alpha
Helix 24
24
B
273 287Right-handed alpha
Helix 25
25
B
297 306Right-handed alpha
Helix 26
26
B
323 337Right-handed alpha
Helix 27
27
B
350 352Right-handed 310
Helix 28
28
B
353 358Right-handed alpha
Helix 29
29
B
358 374Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3VVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
46 50parallel
Strand 5
A
144 148parallel
Strand 6
A
168 172parallel
Strand 7
A
310 316parallel
Strand 8
A
340 346parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
25 26anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 82parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
46 50parallel
Strand 5
B
142 148parallel
Strand 6
B
166 172parallel
Strand 7
B
310 316parallel
Strand 8
B
340 346parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
25 26anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
81 82parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il