Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWA entry

There are 2 chains in PDB entry 3VWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5ASN 544
B
 PRO 5THR 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3VWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 69Right-handed alpha
Helix 2
2
A
99 101Right-handed 310
Helix 3
3
A
102 107Right-handed alpha
Helix 4
4
A
109 127Right-handed alpha
Helix 5
5
A
136 138Right-handed 310
Helix 6
6
A
163 179Right-handed alpha
Helix 7
7
A
189 203Right-handed alpha
Helix 8
8
A
209 211Right-handed 310
Helix 9
9
A
212 221Right-handed alpha
Helix 10
10
A
225 236Right-handed alpha
Helix 11
11
A
236 242Right-handed alpha
Helix 12
12
A
242 253Right-handed alpha
Helix 13
13
A
254 257Right-handed 310
Helix 14
14
A
258 276Right-handed alpha
Helix 15
15
A
277 281Right-handed 310
Helix 16
16
A
286 291Right-handed alpha
Helix 17
17
A
291 308Right-handed alpha
Helix 18
18
A
321 323Right-handed 310
Helix 19
19
A
324 340Right-handed alpha
Helix 20
20
A
345 356Right-handed alpha
Helix 21
21
A
358 373Right-handed alpha
Helix 22
22
A
377 385Right-handed alpha
Helix 23
23
A
385 392Right-handed alpha
Helix 24
24
A
393 395Right-handed 310
Helix 25
25
A
397 412Right-handed alpha
Helix 26
26
A
413 415Right-handed 310
Helix 27
27
A
416 422Right-handed alpha
Helix 28
28
A
422 432Right-handed alpha
Helix 29
29
A
436 451Right-handed alpha
Helix 30
30
A
452 454Right-handed 310
Helix 31
31
A
457 474Right-handed alpha
Helix 32
32
A
477 492Right-handed alpha
Helix 33
33
A
493 495Right-handed 310
Helix 34
34
A
496 503Right-handed alpha
Helix 35
35
A
503 509Right-handed alpha
Helix 36
36
A
510 514Right-handed 310
Helix 37
37
A
516 541Right-handed alpha
Helix 38
38
B
9 13Right-handed 310
Helix 39
39
B
52 54Right-handed 310
Helix 40
40
B
55 69Right-handed alpha
Helix 41
41
B
99 101Right-handed 310
Helix 42
42
B
102 107Right-handed alpha
Helix 43
43
B
109 127Right-handed alpha
Helix 44
44
B
136 138Right-handed 310
Helix 45
45
B
163 179Right-handed alpha
Helix 46
46
B
189 203Right-handed alpha
Helix 47
47
B
209 211Right-handed 310
Helix 48
48
B
212 221Right-handed alpha
Helix 49
49
B
225 236Right-handed alpha
Helix 50
50
B
236 241Right-handed alpha
Helix 51
51
B
242 253Right-handed alpha
Helix 52
52
B
254 257Right-handed 310
Helix 53
53
B
258 276Right-handed alpha
Helix 54
54
B
277 281Right-handed 310
Helix 55
55
B
286 291Right-handed alpha
Helix 56
56
B
291 309Right-handed alpha
Helix 57
57
B
321 323Right-handed 310
Helix 58
58
B
324 339Right-handed alpha
Helix 59
59
B
345 356Right-handed alpha
Helix 60
60
B
358 373Right-handed alpha
Helix 61
61
B
377 385Right-handed alpha
Helix 62
62
B
385 392Right-handed alpha
Helix 63
63
B
393 395Right-handed 310
Helix 64
64
B
397 412Right-handed alpha
Helix 65
65
B
413 415Right-handed 310
Helix 66
66
B
416 422Right-handed alpha
Helix 67
67
B
423 432Right-handed alpha
Helix 68
68
B
436 452Right-handed alpha
Helix 69
69
B
457 474Right-handed alpha
Helix 70
70
B
477 491Right-handed alpha
Helix 71
71
B
492 495Right-handed 310
Helix 72
72
B
496 503Right-handed alpha
Helix 73
73
B
503 509Right-handed alpha
Helix 74
74
B
510 514Right-handed 310
Helix 75
75
B
516 541Right-handed alpha
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There are 8 sheets in PDB entry 3VWA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
25 26anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
43 49anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
A
77 81anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
140 142anti-parallel
Strand 3
A
148 150anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
157 158anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
25 26anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
43 49anti-parallel
Strand 4
B
89 93anti-parallel
Strand 5
B
77 81anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
140 142anti-parallel
Strand 3
B
148 150anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
157 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il