Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWI entry

There are 4 chains in PDB entry 3VWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ALA 179
B
 ASP 3ALA 179
C
 ASP 3ALA 179
D
 ASP 3ALA 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3VWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 26Right-handed alpha
Helix 3
3
A
129 139Right-handed alpha
Helix 4
4
B
12 14Right-handed 310
Helix 5
5
B
15 26Right-handed alpha
Helix 6
6
B
129 139Right-handed alpha
Helix 7
7
C
12 14Right-handed 310
Helix 8
8
C
15 26Right-handed alpha
Helix 9
9
C
129 139Right-handed alpha
Helix 10
10
D
12 14Right-handed 310
Helix 11
11
D
15 26Right-handed alpha
Helix 12
12
D
129 139Right-handed alpha
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There are 8 sheets in PDB entry 3VWI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
32 40anti-parallel
Strand 4
A
169 178parallel
Strand 5
A
158 164anti-parallel
Strand 6
A
148 155anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
99 106anti-parallel
Strand 5
A
116 122anti-parallel
Strand 6
A
143 144anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
32 40anti-parallel
Strand 4
B
169 178parallel
Strand 5
B
158 164anti-parallel
Strand 6
B
148 155anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
45 54anti-parallel
Strand 3
B
86 94anti-parallel
Strand 4
B
99 106anti-parallel
Strand 5
B
116 122anti-parallel
Strand 6
B
143 144anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
69 76anti-parallel
Strand 3
C
32 40anti-parallel
Strand 4
C
169 178parallel
Strand 5
C
158 164anti-parallel
Strand 6
C
148 155anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
45 54anti-parallel
Strand 3
C
86 94anti-parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
116 122anti-parallel
Strand 6
C
143 144anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
69 76anti-parallel
Strand 3
D
32 40anti-parallel
Strand 4
D
169 178parallel
Strand 5
D
158 164anti-parallel
Strand 6
D
148 155anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
45 54anti-parallel
Strand 3
D
86 94anti-parallel
Strand 4
D
98 106anti-parallel
Strand 5
D
116 123anti-parallel
Strand 6
D
143 144anti-parallel
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