Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWM entry

There is 1 chain in PDB entry 3VWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5VAL 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3VWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 36Right-handed alpha
Helix 2
2
A
37 42Right-handed 310
Helix 3
3
A
63 68Right-handed alpha
Helix 4
4
A
72 80Right-handed alpha
Helix 5
5
A
112 128Right-handed alpha
Helix 6
6
A
136 140Right-handed 310
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
153 159Right-handed alpha
Helix 9
9
A
175 184Right-handed alpha
Helix 10
10
A
196 203Right-handed alpha
Helix 11
11
A
216 232Right-handed alpha
Helix 12
12
A
234 243Right-handed alpha
Helix 13
13
A
244 247Right-handed 310
Helix 14
14
A
272 285Right-handed alpha
Helix 15
15
A
296 306Right-handed alpha
Helix 16
16
A
314 319Right-handed alpha
Helix 17
17
A
354 356Right-handed 310
Helix 18
18
A
371 389Right-handed alpha
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There are 3 sheets in PDB entry 3VWM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
92 98anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
358 364anti-parallel
Strand 5
A
348 353anti-parallel
Strand 6
A
340 344anti-parallel
Strand 7
A
330 332anti-parallel
Strand 8
A
325 327anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
269 271anti-parallel
Strand 3
A
254 255anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il