Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VWU entry

There are 10 chains in PDB entry 3VWU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 79	GLY 255
B	LEU 79	GLY 245
C	LEU 79	GLY 255
D	LEU 79	CYS 248
E	HIS 78	CYS 248
F	LEU 79	CYS 248
G	LEU 79	GLY 245
H	LEU 79	GLY 255
I	LEU 79	GLY 245
J	LEU 79	HIS 244

There are 69 helices in PDB entry 3VWU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	107	110	Right-handed 310
Helix 2	2	A	128	137	Right-handed alpha
Helix 3	3	A	137	143	Right-handed alpha
Helix 4	4	A	155	164	Right-handed alpha
Helix 5	5	A	166	170	Right-handed 310
Helix 6	6	A	185	192	Right-handed alpha
Helix 7	7	A	227	241	Right-handed alpha
Helix 8	8	B	107	110	Right-handed 310
Helix 9	9	B	128	137	Right-handed alpha
Helix 10	10	B	137	143	Right-handed alpha
Helix 11	11	B	155	164	Right-handed alpha
Helix 12	12	B	166	170	Right-handed 310
Helix 13	13	B	185	192	Right-handed alpha
Helix 14	14	B	227	244	Right-handed alpha
Helix 15	15	C	107	110	Right-handed 310
Helix 16	16	C	128	137	Right-handed alpha
Helix 17	17	C	137	143	Right-handed alpha
Helix 18	18	C	155	164	Right-handed alpha
Helix 19	19	C	166	170	Right-handed 310
Helix 20	20	C	185	191	Right-handed alpha
Helix 21	21	C	227	241	Right-handed alpha
Helix 22	22	D	107	110	Right-handed 310
Helix 23	23	D	128	137	Right-handed alpha
Helix 24	24	D	137	143	Right-handed alpha
Helix 25	25	D	155	164	Right-handed alpha
Helix 26	26	D	166	170	Right-handed 310
Helix 27	27	D	185	192	Right-handed alpha
Helix 28	28	D	227	244	Right-handed alpha
Helix 29	29	E	107	110	Right-handed 310
Helix 30	30	E	128	137	Right-handed alpha
Helix 31	31	E	137	143	Right-handed alpha
Helix 32	32	E	155	164	Right-handed alpha
Helix 33	33	E	185	191	Right-handed alpha
Helix 34	34	E	227	245	Right-handed alpha
Helix 35	35	F	107	110	Right-handed 310
Helix 36	36	F	128	137	Right-handed alpha
Helix 37	37	F	137	144	Right-handed alpha
Helix 38	38	F	155	164	Right-handed alpha
Helix 39	39	F	166	170	Right-handed 310
Helix 40	40	F	185	191	Right-handed alpha
Helix 41	41	F	227	244	Right-handed alpha
Helix 42	42	G	107	110	Right-handed 310
Helix 43	43	G	128	137	Right-handed alpha
Helix 44	44	G	137	143	Right-handed alpha
Helix 45	45	G	155	164	Right-handed alpha
Helix 46	46	G	166	170	Right-handed 310
Helix 47	47	G	185	191	Right-handed alpha
Helix 48	48	G	227	245	Right-handed alpha
Helix 49	49	H	107	110	Right-handed 310
Helix 50	50	H	128	137	Right-handed alpha
Helix 51	51	H	137	143	Right-handed alpha
Helix 52	52	H	155	164	Right-handed alpha
Helix 53	53	H	166	170	Right-handed 310
Helix 54	54	H	185	191	Right-handed alpha
Helix 55	55	H	227	241	Right-handed alpha
Helix 56	56	I	107	110	Right-handed 310
Helix 57	57	I	128	137	Right-handed alpha
Helix 58	58	I	137	143	Right-handed alpha
Helix 59	59	I	155	164	Right-handed alpha
Helix 60	60	I	166	170	Right-handed 310
Helix 61	61	I	185	192	Right-handed alpha
Helix 62	62	I	227	244	Right-handed alpha
Helix 63	63	J	107	110	Right-handed 310
Helix 64	64	J	128	137	Right-handed alpha
Helix 65	65	J	137	143	Right-handed alpha
Helix 66	66	J	155	164	Right-handed alpha
Helix 67	67	J	166	170	Right-handed 310
Helix 68	68	J	185	192	Right-handed alpha
Helix 69	69	J	227	244	Right-handed alpha

There are 9 sheets in PDB entry 3VWU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	179	181	anti-parallel
Strand 4	A	146	152	parallel
Strand 5	A	113	118	parallel
Strand 6	A	203	208	anti-parallel
Strand 7	A	214	220	anti-parallel
Strand 8	B	214	220	anti-parallel
Strand 9	B	203	208	anti-parallel
Strand 10	B	113	118	anti-parallel
Strand 11	B	146	152	parallel
Strand 12	B	179	181	parallel
Strand 13	B	92	97	anti-parallel
Strand 14	B	100	105	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	200	201	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	200	201	anti-parallel

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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	179	181	anti-parallel
Strand 4	C	146	152	parallel
Strand 5	C	113	118	parallel
Strand 6	C	203	208	anti-parallel
Strand 7	C	214	220	anti-parallel
Strand 8	D	214	220	anti-parallel
Strand 9	D	203	208	anti-parallel
Strand 10	D	113	118	anti-parallel
Strand 11	D	146	152	parallel
Strand 12	D	179	181	parallel
Strand 13	D	92	97	anti-parallel
Strand 14	D	100	105	anti-parallel

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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	105	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	179	181	anti-parallel
Strand 4	E	146	152	parallel
Strand 5	E	113	118	parallel
Strand 6	E	203	208	anti-parallel
Strand 7	E	214	220	anti-parallel
Strand 8	F	214	220	anti-parallel
Strand 9	F	203	208	anti-parallel
Strand 10	F	113	118	anti-parallel
Strand 11	F	146	152	parallel
Strand 12	F	179	181	parallel
Strand 13	F	92	97	anti-parallel
Strand 14	F	100	105	anti-parallel

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There are 14 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	105	first strand
Strand 2	G	92	97	anti-parallel
Strand 3	G	179	181	anti-parallel
Strand 4	G	146	152	parallel
Strand 5	G	113	118	parallel
Strand 6	G	203	208	anti-parallel
Strand 7	G	214	220	anti-parallel
Strand 8	H	214	220	anti-parallel
Strand 9	H	203	208	anti-parallel
Strand 10	H	113	118	anti-parallel
Strand 11	H	146	152	parallel
Strand 12	H	179	181	parallel
Strand 13	H	92	97	anti-parallel
Strand 14	H	100	105	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	200	201	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	200	201	anti-parallel

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There are 14 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	105	first strand
Strand 2	I	92	97	anti-parallel
Strand 3	I	179	181	anti-parallel
Strand 4	I	146	152	parallel
Strand 5	I	113	118	parallel
Strand 6	I	203	208	anti-parallel
Strand 7	I	214	220	anti-parallel
Strand 8	J	214	220	anti-parallel
Strand 9	J	203	208	anti-parallel
Strand 10	J	113	118	anti-parallel
Strand 11	J	146	152	parallel
Strand 12	J	179	181	parallel
Strand 13	J	92	97	anti-parallel
Strand 14	J	100	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VWU

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWU