Analysis of interatomic Contacts of Structural Units in PDB entry:
3VWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VWV entry

There are 2 chains in PDB entry 3VWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 74GLY 255
B
 HIS 75GLU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3VWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
107 110Right-handed 310
Helix 2
2
A
128 137Right-handed alpha
Helix 3
3
A
137 144Right-handed alpha
Helix 4
4
A
155 164Right-handed alpha
Helix 5
5
A
166 170Right-handed 310
Helix 6
6
A
185 191Right-handed alpha
Helix 7
7
A
225 245Right-handed alpha
Helix 8
8
B
107 110Right-handed 310
Helix 9
9
B
128 137Right-handed alpha
Helix 10
10
B
137 143Right-handed alpha
Helix 11
11
B
155 164Right-handed alpha
Helix 12
12
B
166 170Right-handed 310
Helix 13
13
B
185 191Right-handed alpha
Helix 14
14
B
225 245Right-handed alpha
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There are 4 sheets in PDB entry 3VWV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
B
76 77anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
179 181anti-parallel
Strand 4
A
146 152parallel
Strand 5
A
113 118parallel
Strand 6
A
204 208anti-parallel
Strand 7
A
214 219anti-parallel
Strand 8
B
214 219anti-parallel
Strand 9
B
204 208anti-parallel
Strand 10
B
113 118anti-parallel
Strand 11
B
146 152parallel
Strand 12
B
179 181parallel
Strand 13
B
92 97anti-parallel
Strand 14
B
100 105anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
200 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il