Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VX0 entry

There is 1 chain in PDB entry 3VX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1CYS 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3VX0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
15 20Right-handed alpha
Helix 3
3
A
31 35Right-handed 310
Helix 4
4
A
41 48Right-handed alpha
Helix 5
5
A
48 54Right-handed alpha
Helix 6
6
A
96 110Right-handed alpha
Helix 7
7
A
128 132Right-handed 310
Helix 8
8
A
133 137Right-handed 310
Helix 9
9
A
142 146Right-handed 310
Helix 10
10
A
157 164Right-handed alpha
Helix 11
11
A
180 199Right-handed alpha
Helix 12
12
A
207 211Right-handed 310
Helix 13
13
A
212 214Right-handed 310
Helix 14
14
A
215 224Right-handed alpha
Helix 15
15
A
235 240Right-handed alpha
Helix 16
16
A
241 245Right-handed 310
Helix 17
17
A
251 263Right-handed alpha
Helix 18
18
A
268 283Right-handed alpha
Helix 19
19
A
285 288Right-handed 310
Helix 20
20
A
300 305Right-handed alpha
Helix 21
21
A
307 321Right-handed alpha
Helix 22
22
A
330 334Right-handed 310
Helix 23
23
A
346 351Right-handed 310
Helix 24
24
A
356 376Right-handed alpha
Helix 25
25
A
467 470Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 3VX0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
226 229parallel
Strand 3
A
202 205parallel
Strand 4
A
113 118parallel
Strand 5
A
59 62parallel
Strand 6
A
11 14parallel
Strand 7
A
324 328parallel
Strand 8
A
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
84 90anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
171 173anti-parallel
Strand 3
A
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 389first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
405 410anti-parallel
Strand 4
A
461 465anti-parallel
Strand 5
A
433 436anti-parallel
Strand 6
A
441 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 423first strand
Strand 2
A
451 455anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il