Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VX3 entry

There are 2 chains in PDB entry 3VX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LEU 248
B
 ILE 4LEU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3VX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
32 47Right-handed alpha
Helix 3
3
A
62 67Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
106 121Right-handed alpha
Helix 6
6
A
138 146Right-handed alpha
Helix 7
7
A
163 177Right-handed alpha
Helix 8
8
A
199 208Right-handed alpha
Helix 9
9
A
221 226Right-handed alpha
Helix 10
10
A
228 233Right-handed alpha
Helix 11
11
A
235 246Right-handed alpha
Helix 12
12
B
5 16Right-handed alpha
Helix 13
13
B
32 47Right-handed alpha
Helix 14
14
B
62 67Right-handed alpha
Helix 15
15
B
95 98Right-handed 310
Helix 16
16
B
107 121Right-handed alpha
Helix 17
17
B
138 146Right-handed alpha
Helix 18
18
B
160 162Right-handed 310
Helix 19
19
B
163 177Right-handed alpha
Helix 20
20
B
199 208Right-handed alpha
Helix 21
21
B
221 225Right-handed 310
Helix 22
22
B
228 235Right-handed alpha
Helix 23
23
B
235 247Right-handed alpha
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There are 3 sheets in PDB entry 3VX3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
51 55parallel
Strand 4
A
126 132parallel
Strand 5
A
18 26parallel
Strand 6
A
152 157parallel
Strand 7
A
180 189parallel
Strand 8
A
212 217parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
51 55parallel
Strand 4
B
126 132parallel
Strand 5
B
18 26parallel
Strand 6
B
152 157parallel
Strand 7
B
180 189parallel
Strand 8
B
212 217parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il