Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VX6 entry

There is 1 chain in PDB entry 3VX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4LEU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3VX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
59 64Right-handed 310
Helix 3
3
A
84 91Right-handed alpha
Helix 4
4
A
92 111Right-handed alpha
Helix 5
5
A
112 117Right-handed 310
Helix 6
6
A
160 168Right-handed alpha
Helix 7
7
A
185 192Right-handed alpha
Helix 8
8
A
210 222Right-handed alpha
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There are 4 sheets in PDB entry 3VX6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
55 58parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
74 82anti-parallel
Strand 3
A
119 126parallel
Strand 4
A
131 140anti-parallel
Strand 5
A
256 258anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
74 82anti-parallel
Strand 3
A
119 126parallel
Strand 4
A
131 140anti-parallel
Strand 5
A
269 271anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 155first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
194 198parallel
Strand 5
A
173 177anti-parallel
Strand 6
A
180 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il