Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VX7 entry

There are 2 chains in PDB entry 3VX7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 276
B
 PRO -3PRO 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3VX7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 28Right-handed alpha
Helix 2
2
A
84 90Right-handed alpha
Helix 3
3
A
92 111Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
210 222Right-handed alpha
Helix 8
8
B
3 21Right-handed alpha
Helix 9
9
B
83 91Right-handed alpha
Helix 10
10
B
117 123Right-handed alpha
Helix 11
11
B
128 138Right-handed alpha
Helix 12
12
B
139 141Right-handed 310
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There are 4 sheets in PDB entry 3VX7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
147 154anti-parallel
Strand 3
A
239 246anti-parallel
Strand 4
A
227 231anti-parallel
Strand 5
A
194 197parallel
Strand 6
A
173 176anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
54 58parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
120 126parallel
Strand 4
A
131 143anti-parallel
Strand 5
A
269 272anti-parallel
Strand 6
B
75 79parallel
Strand 7
B
59 70anti-parallel
Strand 8
B
44 52anti-parallel
Strand 9
B
33 41anti-parallel
Strand 10
B
24 30anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
131 143anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
B
75 79parallel
Strand 5
B
59 70anti-parallel
Strand 6
B
109 113anti-parallel
Strand 7
B
98 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il