Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VX8 entry

There are 4 chains in PDB entry 3VX8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 9	MET 325
A	PRO 7	MET 325
B	PRO 23	MET 304
C	MET 25	MET 304

There are 35 helices in PDB entry 3VX8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	21	35	Right-handed alpha
Helix 2	2	D	64	68	Right-handed 310
Helix 3	3	D	98	105	Right-handed alpha
Helix 4	4	D	107	124	Right-handed alpha
Helix 5	5	D	125	130	Right-handed alpha
Helix 6	6	D	131	134	Right-handed 310
Helix 7	7	D	173	177	Right-handed alpha
Helix 8	8	D	178	195	Right-handed alpha
Helix 9	9	D	218	220	Right-handed 310
Helix 10	10	D	221	226	Right-handed alpha
Helix 11	11	D	249	262	Right-handed alpha
Helix 12	12	A	21	35	Right-handed alpha
Helix 13	13	A	64	68	Right-handed 310
Helix 14	14	A	98	104	Right-handed alpha
Helix 15	15	A	106	124	Right-handed alpha
Helix 16	16	A	125	130	Right-handed alpha
Helix 17	17	A	131	134	Right-handed 310
Helix 18	18	A	173	177	Right-handed alpha
Helix 19	19	A	178	195	Right-handed alpha
Helix 20	20	A	218	226	Right-handed 310
Helix 21	21	A	249	262	Right-handed alpha
Helix 22	22	B	24	31	Right-handed alpha
Helix 23	23	B	34	49	Right-handed alpha
Helix 24	24	B	58	62	Right-handed 310
Helix 25	25	B	223	230	Right-handed 310
Helix 26	26	B	259	275	Right-handed alpha
Helix 27	27	B	279	281	Right-handed 310
Helix 28	28	B	282	292	Right-handed alpha
Helix 29	29	C	26	31	Right-handed alpha
Helix 30	30	C	34	49	Right-handed alpha
Helix 31	31	C	58	62	Right-handed 310
Helix 32	32	C	225	231	Right-handed 310
Helix 33	33	C	259	274	Right-handed alpha
Helix 34	34	C	279	281	Right-handed 310
Helix 35	35	C	282	292	Right-handed alpha

There are 12 sheets in PDB entry 3VX8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	61	63	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	49	first strand
Strand 2	D	87	96	anti-parallel
Strand 3	D	137	144	parallel
Strand 4	D	149	159	anti-parallel
Strand 5	D	304	307	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	49	first strand
Strand 2	D	87	96	anti-parallel
Strand 3	D	137	144	parallel
Strand 4	D	149	159	anti-parallel
Strand 5	D	317	320	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	172	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	265	271	anti-parallel
Strand 4	D	230	237	parallel
Strand 5	D	203	209	anti-parallel
Strand 6	D	214	217	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	277	278	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	284	289	anti-parallel
Strand 4	A	265	271	anti-parallel
Strand 5	A	231	237	parallel
Strand 6	A	203	208	anti-parallel
Strand 7	A	214	217	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	61	63	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	87	96	anti-parallel
Strand 3	A	137	144	parallel
Strand 4	A	149	160	anti-parallel
Strand 5	A	303	307	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	87	96	anti-parallel
Strand 3	A	137	144	parallel
Strand 4	A	149	160	anti-parallel
Strand 5	A	317	320	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	277	278	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	72	80	anti-parallel
Strand 3	B	193	202	anti-parallel
Strand 4	B	207	215	anti-parallel
Strand 5	B	251	255	anti-parallel
Strand 6	B	240	244	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	72	80	anti-parallel
Strand 3	C	193	201	anti-parallel
Strand 4	C	208	215	anti-parallel
Strand 5	C	251	255	anti-parallel
Strand 6	C	240	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VX8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VX8