Analysis of interatomic Contacts of Structural Units in PDB entry:
3VXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VXB entry

There is 1 chain in PDB entry 3VXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 38LYS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3VXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 62Right-handed alpha
Helix 2
2
A
62 69Right-handed alpha
Helix 3
3
A
78 80Right-handed 310
Helix 4
4
A
81 91Right-handed alpha
Helix 5
5
A
103 106Right-handed 310
Helix 6
6
A
107 113Right-handed alpha
Helix 7
7
A
119 126Right-handed alpha
Helix 8
8
A
126 131Right-handed alpha
Helix 9
9
A
134 141Right-handed alpha
Helix 10
10
A
164 170Right-handed alpha
Helix 11
11
A
177 191Right-handed alpha
Helix 12
12
A
203 219Right-handed alpha
Helix 13
13
A
220 228Right-handed alpha
Helix 14
14
A
230 235Right-handed 310
Helix 15
15
A
236 252Right-handed alpha
Helix 16
16
A
258 262Right-handed 310
Helix 17
17
A
267 275Right-handed alpha
Helix 18
18
A
286 295Right-handed alpha
Helix 19
19
A
295 302Right-handed alpha
Helix 20
20
A
337 348Right-handed alpha
Helix 21
21
A
350 360Right-handed alpha
Helix 22
22
A
367 376Right-handed 310
Helix 23
23
A
378 392Right-handed alpha
Helix 24
24
A
398 403Right-handed alpha
Helix 25
25
A
404 406Right-handed 310
Helix 26
26
A
407 420Right-handed alpha
Helix 27
27
A
424 434Right-handed alpha
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There are 3 sheets in PDB entry 3VXB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
39 44parallel
Strand 3
A
98 101parallel
Strand 4
A
328 331anti-parallel
Strand 5
A
150 151anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
278 284parallel
Strand 3
A
156 163anti-parallel
Strand 4
A
303 306anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
278 284parallel
Strand 3
A
156 163anti-parallel
Strand 4
A
321 324anti-parallel
Strand 5
A
395 397parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il