Analysis of interatomic Contacts of Structural Units in PDB entry:
3VXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VXD entry

There are 4 chains in PDB entry 3VXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2TRP 398
B
 MET 1TRP 398
C
 MET 1TRP 398
D
 MET 1TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 3VXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
25 48Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
87 107Right-handed alpha
Helix 5
5
A
115 121Right-handed alpha
Helix 6
6
A
123 132Right-handed alpha
Helix 7
7
A
133 151Right-handed alpha
Helix 8
8
A
175 180Right-handed alpha
Helix 9
9
A
180 191Right-handed alpha
Helix 10
10
A
192 211Right-handed alpha
Helix 11
11
A
245 264Right-handed alpha
Helix 12
12
A
265 282Right-handed alpha
Helix 13
13
A
304 320Right-handed alpha
Helix 14
14
A
328 347Right-handed alpha
Helix 15
15
A
376 392Right-handed alpha
Helix 16
16
B
15 20Right-handed alpha
Helix 17
17
B
25 48Right-handed alpha
Helix 18
18
B
70 86Right-handed alpha
Helix 19
19
B
87 107Right-handed alpha
Helix 20
20
B
115 121Right-handed alpha
Helix 21
21
B
123 132Right-handed alpha
Helix 22
22
B
133 151Right-handed alpha
Helix 23
23
B
175 180Right-handed alpha
Helix 24
24
B
180 191Right-handed alpha
Helix 25
25
B
192 210Right-handed alpha
Helix 26
26
B
245 264Right-handed alpha
Helix 27
27
B
265 281Right-handed alpha
Helix 28
28
B
304 320Right-handed alpha
Helix 29
29
B
328 347Right-handed alpha
Helix 30
30
B
376 392Right-handed alpha
Helix 31
31
C
15 20Right-handed alpha
Helix 32
32
C
25 48Right-handed alpha
Helix 33
33
C
70 86Right-handed alpha
Helix 34
34
C
87 107Right-handed alpha
Helix 35
35
C
115 121Right-handed alpha
Helix 36
36
C
123 132Right-handed alpha
Helix 37
37
C
133 152Right-handed alpha
Helix 38
38
C
175 180Right-handed alpha
Helix 39
39
C
180 191Right-handed alpha
Helix 40
40
C
192 210Right-handed alpha
Helix 41
41
C
245 264Right-handed alpha
Helix 42
42
C
265 282Right-handed alpha
Helix 43
43
C
304 320Right-handed alpha
Helix 44
44
C
328 347Right-handed alpha
Helix 45
45
C
366 369Right-handed 310
Helix 46
46
C
376 392Right-handed alpha
Helix 47
47
D
15 20Right-handed alpha
Helix 48
48
D
25 48Right-handed alpha
Helix 49
49
D
70 86Right-handed alpha
Helix 50
50
D
87 107Right-handed alpha
Helix 51
51
D
115 121Right-handed alpha
Helix 52
52
D
123 132Right-handed alpha
Helix 53
53
D
133 151Right-handed alpha
Helix 54
54
D
175 180Right-handed alpha
Helix 55
55
D
180 191Right-handed alpha
Helix 56
56
D
192 210Right-handed alpha
Helix 57
57
D
245 264Right-handed alpha
Helix 58
58
D
265 282Right-handed alpha
Helix 59
59
D
304 320Right-handed alpha
Helix 60
60
D
328 347Right-handed alpha
Helix 61
61
D
376 392Right-handed alpha
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There are 8 sheets in PDB entry 3VXD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
63 64anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 365first strand
Strand 2
A
370 374anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
63 64anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 365first strand
Strand 2
B
370 374anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
63 64anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 365first strand
Strand 2
C
370 374anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
63 64anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
362 365first strand
Strand 2
D
370 374anti-parallel
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