Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYH entry

There are 4 chains in PDB entry 3VYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 110
A
 SER 112SER 112
A
 TYR 114VAL 204
B
 MET 1VAL 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 31Right-handed alpha
Helix 2
2
A
35 49Right-handed alpha
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
65 75Right-handed alpha
Helix 5
5
A
75 82Right-handed alpha
Helix 6
6
A
115 120Right-handed alpha
Helix 7
7
A
123 128Right-handed alpha
Helix 8
8
A
128 136Right-handed alpha
Helix 9
9
A
138 148Right-handed alpha
Helix 10
10
A
182 188Right-handed alpha
Helix 11
11
A
191 197Right-handed alpha
Helix 12
12
B
27 43Right-handed alpha
Helix 13
13
B
47 57Right-handed alpha
Helix 14
14
B
59 66Right-handed alpha
Helix 15
15
B
67 83Right-handed alpha
Helix 16
16
B
87 101Right-handed alpha
Helix 17
17
B
112 126Right-handed alpha
Helix 18
18
B
159 163Right-handed 310
Helix 19
19
B
178 183Right-handed alpha
Helix 20
20
B
200 205Right-handed alpha
Helix 21
21
B
206 208Right-handed 310
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There are 3 sheets in PDB entry 3VYH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
167 171parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
156 161parallel
Strand 3
B
212 219parallel
Strand 4
B
191 199anti-parallel
Strand 5
B
166 176anti-parallel
Strand 6
B
130 131anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
156 161parallel
Strand 3
B
212 219parallel
Strand 4
B
191 199anti-parallel
Strand 5
B
166 176anti-parallel
Strand 6
B
144 147anti-parallel
Strand 7
B
223 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il