Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYI entry

There are 12 chains in PDB entry 3VYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 220LEU 265
B
 SER 220LEU 265
D
 GLY 219GLY 266
C
 SER 220ASP 267
E
 SER 220LEU 265
F
 GLY 219ASP 267
H
 GLU 221LYS 260
G
 SER 220ILE 259
I
 SER 220ILE 259
J
 SER 220GLN 261
K
 ARG 222LYS 260
L
 GLU 221LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3VYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
220 262Right-handed alpha
Helix 2
2
B
221 262Right-handed alpha
Helix 3
3
D
220 262Right-handed alpha
Helix 4
4
C
221 262Right-handed alpha
Helix 5
5
E
221 262Right-handed alpha
Helix 6
6
F
220 262Right-handed alpha
Helix 7
7
H
222 258Right-handed alpha
Helix 8
8
G
221 259Right-handed alpha
Helix 9
9
I
221 258Right-handed alpha
Helix 10
10
J
221 258Right-handed alpha
Helix 11
11
K
223 260Right-handed alpha
Helix 12
12
L
222 257Right-handed alpha
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There are no sheets in PDB entry 3VYI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il