Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYL entry

There are 8 chains in PDB entry 3VYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 297
B
 MET 1PRO 297
C
 MET 1PRO 297
D
 MET 1PRO 297
E
 MET 1PRO 297
F
 MET 1PRO 297
G
 MET 1PRO 297
H
 MET 1PRO 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 3VYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
16 31Right-handed alpha
Helix 3
3
A
46 58Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
77 99Right-handed alpha
Helix 6
6
A
119 140Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
181 188Right-handed alpha
Helix 9
9
A
190 198Right-handed alpha
Helix 10
10
A
221 232Right-handed alpha
Helix 11
11
A
249 256Right-handed alpha
Helix 12
12
A
265 293Right-handed alpha
Helix 13
13
B
9 11Right-handed 310
Helix 14
14
B
16 30Right-handed alpha
Helix 15
15
B
46 57Right-handed alpha
Helix 16
16
B
68 72Right-handed 310
Helix 17
17
B
77 98Right-handed alpha
Helix 18
18
B
119 140Right-handed alpha
Helix 19
19
B
159 171Right-handed alpha
Helix 20
20
B
181 188Right-handed alpha
Helix 21
21
B
190 198Right-handed alpha
Helix 22
22
B
221 232Right-handed alpha
Helix 23
23
B
249 256Right-handed alpha
Helix 24
24
B
265 293Right-handed alpha
Helix 25
25
C
9 11Right-handed 310
Helix 26
26
C
16 30Right-handed alpha
Helix 27
27
C
46 58Right-handed alpha
Helix 28
28
C
68 72Right-handed 310
Helix 29
29
C
77 98Right-handed alpha
Helix 30
30
C
119 140Right-handed alpha
Helix 31
31
C
159 171Right-handed alpha
Helix 32
32
C
181 188Right-handed alpha
Helix 33
33
C
190 198Right-handed alpha
Helix 34
34
C
221 232Right-handed alpha
Helix 35
35
C
251 256Right-handed alpha
Helix 36
36
C
265 293Right-handed alpha
Helix 37
37
D
9 11Right-handed 310
Helix 38
38
D
16 31Right-handed alpha
Helix 39
39
D
46 57Right-handed alpha
Helix 40
40
D
68 72Right-handed 310
Helix 41
41
D
77 99Right-handed alpha
Helix 42
42
D
119 140Right-handed alpha
Helix 43
43
D
159 171Right-handed alpha
Helix 44
44
D
181 188Right-handed alpha
Helix 45
45
D
190 198Right-handed alpha
Helix 46
46
D
221 232Right-handed alpha
Helix 47
47
D
249 256Right-handed alpha
Helix 48
48
D
265 293Right-handed alpha
Helix 49
49
E
9 11Right-handed 310
Helix 50
50
E
16 30Right-handed alpha
Helix 51
51
E
46 57Right-handed alpha
Helix 52
52
E
68 72Right-handed 310
Helix 53
53
E
77 99Right-handed alpha
Helix 54
54
E
119 141Right-handed alpha
Helix 55
55
E
159 171Right-handed alpha
Helix 56
56
E
181 188Right-handed alpha
Helix 57
57
E
190 198Right-handed alpha
Helix 58
58
E
221 232Right-handed alpha
Helix 59
59
E
251 256Right-handed alpha
Helix 60
60
E
265 292Right-handed alpha
Helix 61
61
F
9 11Right-handed 310
Helix 62
62
F
16 31Right-handed alpha
Helix 63
63
F
46 57Right-handed alpha
Helix 64
64
F
68 72Right-handed 310
Helix 65
65
F
77 99Right-handed alpha
Helix 66
66
F
119 140Right-handed alpha
Helix 67
67
F
159 171Right-handed alpha
Helix 68
68
F
181 188Right-handed alpha
Helix 69
69
F
190 199Right-handed alpha
Helix 70
70
F
221 232Right-handed alpha
Helix 71
71
F
249 257Right-handed alpha
Helix 72
72
F
265 293Right-handed alpha
Helix 73
73
G
8 12Right-handed alpha
Helix 74
74
G
16 31Right-handed alpha
Helix 75
75
G
46 58Right-handed alpha
Helix 76
76
G
68 72Right-handed 310
Helix 77
77
G
77 99Right-handed alpha
Helix 78
78
G
119 140Right-handed alpha
Helix 79
79
G
159 171Right-handed alpha
Helix 80
80
G
181 188Right-handed alpha
Helix 81
81
G
190 198Right-handed alpha
Helix 82
82
G
221 232Right-handed alpha
Helix 83
83
G
249 256Right-handed alpha
Helix 84
84
G
265 293Right-handed alpha
Helix 85
85
H
8 12Right-handed alpha
Helix 86
86
H
16 31Right-handed alpha
Helix 87
87
H
46 57Right-handed alpha
Helix 88
88
H
68 72Right-handed 310
Helix 89
89
H
77 98Right-handed alpha
Helix 90
90
H
119 140Right-handed alpha
Helix 91
91
H
159 171Right-handed alpha
Helix 92
92
H
181 188Right-handed alpha
Helix 93
93
H
190 199Right-handed alpha
Helix 94
94
H
221 232Right-handed alpha
Helix 95
95
H
249 256Right-handed alpha
Helix 96
96
H
265 293Right-handed alpha
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There are 8 sheets in PDB entry 3VYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
34 37parallel
Strand 3
A
60 66parallel
Strand 4
A
102 106parallel
Strand 5
A
143 147parallel
Strand 6
A
175 180parallel
Strand 7
A
202 207parallel
Strand 8
A
238 240parallel
Strand 9
A
4 7parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
34 37parallel
Strand 3
B
60 66parallel
Strand 4
B
102 106parallel
Strand 5
B
143 147parallel
Strand 6
B
175 180parallel
Strand 7
B
202 207parallel
Strand 8
B
238 240parallel
Strand 9
B
4 7parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
34 38parallel
Strand 3
C
60 67parallel
Strand 4
C
102 110parallel
Strand 5
C
143 147parallel
Strand 6
C
175 180parallel
Strand 7
C
202 207parallel
Strand 8
C
237 240parallel
Strand 9
C
4 7parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
34 37parallel
Strand 3
D
60 66parallel
Strand 4
D
102 106parallel
Strand 5
D
143 147parallel
Strand 6
D
175 180parallel
Strand 7
D
202 207parallel
Strand 8
D
238 240parallel
Strand 9
D
4 7parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
34 38parallel
Strand 3
E
60 67parallel
Strand 4
E
102 110parallel
Strand 5
E
143 147parallel
Strand 6
E
175 180parallel
Strand 7
E
202 207parallel
Strand 8
E
238 240parallel
Strand 9
E
4 7parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
34 38parallel
Strand 3
F
60 66parallel
Strand 4
F
102 106parallel
Strand 5
F
143 148parallel
Strand 6
F
175 180parallel
Strand 7
F
202 207parallel
Strand 8
F
238 240parallel
Strand 9
F
4 7parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 7first strand
Strand 2
G
34 37parallel
Strand 3
G
60 64parallel
Strand 4
G
102 105parallel
Strand 5
G
143 148parallel
Strand 6
G
175 180parallel
Strand 7
G
202 207parallel
Strand 8
G
237 240parallel
Strand 9
G
3 7parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
34 37parallel
Strand 3
H
60 66parallel
Strand 4
H
102 106parallel
Strand 5
H
143 148parallel
Strand 6
H
175 180parallel
Strand 7
H
202 207parallel
Strand 8
H
238 240parallel
Strand 9
H
4 7parallel
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