Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYN entry

There are 2 chains in PDB entry 3VYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 60ALA 406
B
 LEU 58ALA 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3VYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
180 187Right-handed alpha
Helix 2
2
A
306 309Right-handed 310
Helix 3
3
A
339 342Right-handed 310
Helix 4
4
A
358 369Right-handed alpha
Helix 5
5
A
392 396Right-handed 310
Helix 6
6
A
397 404Right-handed alpha
Helix 7
7
B
180 187Right-handed alpha
Helix 8
8
B
306 309Right-handed 310
Helix 9
9
B
358 369Right-handed alpha
Helix 10
10
B
392 396Right-handed 310
Helix 11
11
B
397 404Right-handed alpha
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There are 13 sheets in PDB entry 3VYN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
111 114anti-parallel
Strand 4
A
103 105anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
136 145parallel
Strand 3
A
123 131anti-parallel
Strand 4
A
88 94anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
237 239parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
198 202anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
243 249parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
188 193anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
253 258parallel
Strand 4
A
263 268anti-parallel
Strand 5
A
271 279anti-parallel
Strand 6
A
355 357anti-parallel
Strand 7
A
334 337parallel
Strand 8
A
319 327anti-parallel
Strand 9
A
297 304anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
111 114anti-parallel
Strand 4
B
103 105anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
137 145parallel
Strand 3
B
123 131anti-parallel
Strand 4
B
87 94anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
237 239parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 157first strand
Strand 2
B
170 174anti-parallel
Strand 3
B
207 211anti-parallel
Strand 4
B
199 202anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
243 249parallel
Strand 3
B
221 226anti-parallel
Strand 4
B
188 193anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 277first strand
Strand 2
B
263 268anti-parallel
Strand 3
B
253 258anti-parallel
Strand 4
B
374 378parallel
Strand 5
B
290 293anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 304first strand
Strand 2
B
319 327anti-parallel
Strand 3
B
334 337anti-parallel
Strand 4
B
355 357parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il