Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYR entry

There are 2 chains in PDB entry 3VYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4PHE 75
B
 GLU 2PHE 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3VYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 74Right-handed alpha
Helix 2
2
B
5 9Right-handed 310
Helix 3
3
B
10 27Right-handed alpha
Helix 4
4
B
38 48Right-handed alpha
Helix 5
5
B
49 54Right-handed alpha
Helix 6
6
B
72 89Right-handed alpha
Helix 7
7
B
98 103Right-handed alpha
Helix 8
8
B
110 117Right-handed alpha
Helix 9
9
B
126 137Right-handed alpha
Helix 10
10
B
149 167Right-handed alpha
Helix 11
11
B
180 190Right-handed alpha
Helix 12
12
B
201 208Right-handed alpha
Helix 13
13
B
209 211Right-handed 310
Helix 14
14
B
212 220Right-handed alpha
Helix 15
15
B
229 246Right-handed alpha
Helix 16
16
B
264 274Right-handed alpha
Helix 17
17
B
297 308Right-handed 310
Helix 18
18
B
324 330Right-handed alpha
Helix 19
19
B
334 338Right-handed 310
Helix 20
20
B
352 357Right-handed alpha
Helix 21
21
B
360 368Right-handed alpha
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There are 3 sheets in PDB entry 3VYR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
24 29anti-parallel
Strand 4
A
48 52parallel
Strand 5
A
41 45anti-parallel
Strand 6
A
7 13anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
32 36parallel
Strand 3
B
196 200parallel
Strand 4
B
223 226parallel
Strand 5
B
251 253parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
93 97parallel
Strand 3
B
141 148parallel
Strand 4
B
171 178parallel
Strand 5
B
286 295anti-parallel
Strand 6
B
275 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il