Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VYU entry

There are 3 chains in PDB entry 3VYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 56
B
 PHE 5LEU 371
C
 LEU 20ARG 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3VYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
5 9Right-handed 310
Helix 2
2
B
10 25Right-handed alpha
Helix 3
3
B
26 28Right-handed 310
Helix 4
4
B
38 48Right-handed alpha
Helix 5
5
B
49 53Right-handed 310
Helix 6
6
B
72 89Right-handed alpha
Helix 7
7
B
100 104Right-handed 310
Helix 8
8
B
110 116Right-handed alpha
Helix 9
9
B
126 136Right-handed alpha
Helix 10
10
B
149 160Right-handed alpha
Helix 11
11
B
160 166Right-handed alpha
Helix 12
12
B
179 190Right-handed alpha
Helix 13
13
B
200 208Right-handed alpha
Helix 14
14
B
209 220Right-handed alpha
Helix 15
15
B
229 247Right-handed alpha
Helix 16
16
B
255 259Right-handed 310
Helix 17
17
B
264 274Right-handed alpha
Helix 18
18
B
303 308Right-handed alpha
Helix 19
19
B
324 330Right-handed alpha
Helix 20
20
B
334 338Right-handed 310
Helix 21
21
B
352 356Right-handed 310
Helix 22
22
B
360 368Right-handed alpha
Helix 23
23
C
22 27Right-handed alpha
Helix 24
24
C
73 87Right-handed alpha
Helix 25
25
C
106 122Right-handed alpha
Helix 26
26
C
174 185Right-handed alpha
Helix 27
27
C
200 212Right-handed alpha
Helix 28
28
C
225 238Right-handed alpha
Helix 29
29
C
247 249Right-handed 310
Helix 30
30
C
252 263Right-handed alpha
Helix 31
31
C
283 293Right-handed alpha
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There are 6 sheets in PDB entry 3VYU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
18 21anti-parallel
Strand 3
A
5 11anti-parallel
Strand 4
A
41 44anti-parallel
Strand 5
A
49 52anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
32 36parallel
Strand 3
B
196 199parallel
Strand 4
B
223 225parallel
Strand 5
B
251 252parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
94 97parallel
Strand 3
B
142 148parallel
Strand 4
B
171 178parallel
Strand 5
B
286 295anti-parallel
Strand 6
B
275 282anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
52 59anti-parallel
Strand 3
C
142 152anti-parallel
Strand 4
C
91 102anti-parallel
Strand 5
C
130 136parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
71 72anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 220first strand
Strand 2
C
276 279anti-parallel
Strand 3
C
166 169anti-parallel
Strand 4
C
301 307anti-parallel
Strand 5
C
241 245anti-parallel
Strand 6
C
314 317parallel
Strand 7
C
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il