Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VYW entry

There are 4 chains in PDB entry 3VYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	SER 307
B	LYS 2	ILE 306
C	LYS 2	ILE 306
D	LYS 2	SER 307

There are 56 helices in PDB entry 3VYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	19	Right-handed alpha
Helix 2	2	A	23	38	Right-handed alpha
Helix 3	3	A	73	82	Right-handed alpha
Helix 4	4	A	82	87	Right-handed alpha
Helix 5	5	A	87	95	Right-handed alpha
Helix 6	6	A	108	122	Right-handed alpha
Helix 7	7	A	147	158	Right-handed alpha
Helix 8	8	A	174	179	Right-handed alpha
Helix 9	9	A	180	182	Right-handed 310
Helix 10	10	A	200	204	Right-handed 310
Helix 11	11	A	205	214	Right-handed alpha
Helix 12	12	A	228	238	Right-handed alpha
Helix 13	13	A	267	277	Right-handed alpha
Helix 14	14	A	291	304	Right-handed alpha
Helix 15	15	B	3	18	Right-handed alpha
Helix 16	16	B	23	38	Right-handed alpha
Helix 17	17	B	73	82	Right-handed alpha
Helix 18	18	B	82	87	Right-handed alpha
Helix 19	19	B	87	93	Right-handed alpha
Helix 20	20	B	108	122	Right-handed alpha
Helix 21	21	B	147	158	Right-handed alpha
Helix 22	22	B	174	179	Right-handed alpha
Helix 23	23	B	180	182	Right-handed 310
Helix 24	24	B	200	204	Right-handed 310
Helix 25	25	B	205	215	Right-handed alpha
Helix 26	26	B	228	238	Right-handed alpha
Helix 27	27	B	267	277	Right-handed alpha
Helix 28	28	B	291	304	Right-handed alpha
Helix 29	29	C	3	19	Right-handed alpha
Helix 30	30	C	23	38	Right-handed alpha
Helix 31	31	C	73	82	Right-handed alpha
Helix 32	32	C	82	87	Right-handed alpha
Helix 33	33	C	87	95	Right-handed alpha
Helix 34	34	C	108	122	Right-handed alpha
Helix 35	35	C	147	158	Right-handed alpha
Helix 36	36	C	174	179	Right-handed alpha
Helix 37	37	C	180	182	Right-handed 310
Helix 38	38	C	200	204	Right-handed 310
Helix 39	39	C	205	215	Right-handed alpha
Helix 40	40	C	228	238	Right-handed alpha
Helix 41	41	C	267	277	Right-handed alpha
Helix 42	42	C	291	304	Right-handed alpha
Helix 43	43	D	3	19	Right-handed alpha
Helix 44	44	D	23	38	Right-handed alpha
Helix 45	45	D	73	82	Right-handed alpha
Helix 46	46	D	83	86	Right-handed 310
Helix 47	47	D	87	93	Right-handed alpha
Helix 48	48	D	108	122	Right-handed alpha
Helix 49	49	D	147	157	Right-handed alpha
Helix 50	50	D	174	179	Right-handed alpha
Helix 51	51	D	180	182	Right-handed 310
Helix 52	52	D	200	204	Right-handed 310
Helix 53	53	D	205	215	Right-handed alpha
Helix 54	54	D	228	238	Right-handed alpha
Helix 55	55	D	267	277	Right-handed alpha
Helix 56	56	D	291	304	Right-handed alpha

There are 8 sheets in PDB entry 3VYW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	65	66	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	126	133	parallel
Strand 4	A	97	103	parallel
Strand 5	A	187	192	parallel
Strand 6	A	216	224	parallel
Strand 7	A	253	258	anti-parallel
Strand 8	A	241	246	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	56	60	anti-parallel
Strand 3	B	65	66	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	126	133	parallel
Strand 4	B	97	103	parallel
Strand 5	B	187	192	parallel
Strand 6	B	216	224	parallel
Strand 7	B	253	258	anti-parallel
Strand 8	B	241	246	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	56	60	anti-parallel
Strand 3	C	65	66	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	126	133	parallel
Strand 4	C	97	103	parallel
Strand 5	C	187	192	parallel
Strand 6	C	216	224	parallel
Strand 7	C	253	258	anti-parallel
Strand 8	C	241	246	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	65	66	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	126	133	parallel
Strand 4	D	97	103	parallel
Strand 5	D	187	192	parallel
Strand 6	D	216	224	parallel
Strand 7	D	254	258	anti-parallel
Strand 8	D	241	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VYW