Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZ0 entry

There are 3 chains in PDB entry 3VZ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 456
B
 MSE 1GLY 456
C
 MSE 1GLY 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3VZ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 40Right-handed alpha
Helix 2
2
A
45 63Right-handed alpha
Helix 3
3
A
63 76Right-handed alpha
Helix 4
4
A
78 104Right-handed alpha
Helix 5
5
A
136 149Right-handed alpha
Helix 6
6
A
161 176Right-handed alpha
Helix 7
7
A
188 197Right-handed alpha
Helix 8
8
A
209 223Right-handed alpha
Helix 9
9
A
244 258Right-handed alpha
Helix 10
10
A
259 262Right-handed 310
Helix 11
11
A
276 289Right-handed alpha
Helix 12
12
A
308 325Right-handed alpha
Helix 13
13
A
374 384Right-handed alpha
Helix 14
14
A
397 408Right-handed alpha
Helix 15
15
A
430 432Right-handed 310
Helix 16
16
A
439 444Right-handed alpha
Helix 17
17
B
22 40Right-handed alpha
Helix 18
18
B
45 63Right-handed alpha
Helix 19
19
B
63 76Right-handed alpha
Helix 20
20
B
78 104Right-handed alpha
Helix 21
21
B
136 150Right-handed alpha
Helix 22
22
B
161 175Right-handed alpha
Helix 23
23
B
188 198Right-handed alpha
Helix 24
24
B
209 223Right-handed alpha
Helix 25
25
B
244 258Right-handed alpha
Helix 26
26
B
259 262Right-handed 310
Helix 27
27
B
276 289Right-handed alpha
Helix 28
28
B
308 325Right-handed alpha
Helix 29
29
B
374 383Right-handed alpha
Helix 30
30
B
397 408Right-handed alpha
Helix 31
31
B
439 444Right-handed alpha
Helix 32
32
C
22 40Right-handed alpha
Helix 33
33
C
41 44Right-handed 310
Helix 34
34
C
45 63Right-handed alpha
Helix 35
35
C
63 76Right-handed alpha
Helix 36
36
C
78 105Right-handed alpha
Helix 37
37
C
136 150Right-handed alpha
Helix 38
38
C
161 176Right-handed alpha
Helix 39
39
C
188 198Right-handed alpha
Helix 40
40
C
209 223Right-handed alpha
Helix 41
41
C
244 258Right-handed alpha
Helix 42
42
C
259 262Right-handed 310
Helix 43
43
C
274 289Right-handed alpha
Helix 44
44
C
308 325Right-handed alpha
Helix 45
45
C
374 384Right-handed alpha
Helix 46
46
C
397 408Right-handed alpha
Helix 47
47
C
439 444Right-handed alpha
Helix 48
48
D
22 40Right-handed alpha
Helix 49
49
D
45 63Right-handed alpha
Helix 50
50
D
63 76Right-handed alpha
Helix 51
51
D
78 104Right-handed alpha
Helix 52
52
D
136 150Right-handed alpha
Helix 53
53
D
161 176Right-handed alpha
Helix 54
54
D
188 198Right-handed alpha
Helix 55
55
D
209 223Right-handed alpha
Helix 56
56
D
244 258Right-handed alpha
Helix 57
57
D
259 262Right-handed 310
Helix 58
58
D
276 289Right-handed alpha
Helix 59
59
D
308 325Right-handed alpha
Helix 60
60
D
374 383Right-handed alpha
Helix 61
61
D
397 408Right-handed alpha
Helix 62
62
D
430 432Right-handed 310
Helix 63
63
D
439 444Right-handed alpha
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There are 14 sheets in PDB entry 3VZ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
14 18anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
B
412 415parallel
Strand 5
B
391 394parallel
Strand 6
B
236 239parallel
Strand 7
B
269 273parallel
Strand 8
B
366 372parallel
Strand 9
B
346 349parallel
Strand 10
B
328 331anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
152 156parallel
Strand 3
A
125 129parallel
Strand 4
A
201 207parallel
Strand 5
A
226 230parallel
Strand 6
A
434 435anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
346 349anti-parallel
Strand 3
A
366 372parallel
Strand 4
A
269 273parallel
Strand 5
A
236 239parallel
Strand 6
A
391 394parallel
Strand 7
A
412 415parallel
Strand 8
B
448 455parallel
Strand 9
B
115 122anti-parallel
Strand 10
B
107 108anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
14 18anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
152 157parallel
Strand 3
B
125 130parallel
Strand 4
B
201 207parallel
Strand 5
B
226 230parallel
Strand 6
B
434 435anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
430 431anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
14 18anti-parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
115 122anti-parallel
Strand 3
C
448 455anti-parallel
Strand 4
D
412 415parallel
Strand 5
D
391 394parallel
Strand 6
D
235 239parallel
Strand 7
D
267 273parallel
Strand 8
D
366 372parallel
Strand 9
D
346 349parallel
Strand 10
D
328 331anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 184first strand
Strand 2
C
152 157parallel
Strand 3
C
125 130parallel
Strand 4
C
201 207parallel
Strand 5
C
226 230parallel
Strand 6
C
434 435anti-parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 331first strand
Strand 2
C
346 349anti-parallel
Strand 3
C
366 372parallel
Strand 4
C
269 273parallel
Strand 5
C
236 239parallel
Strand 6
C
391 394parallel
Strand 7
C
412 415parallel
Strand 8
D
448 455parallel
Strand 9
D
115 122anti-parallel
Strand 10
D
107 108anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
430 431anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
14 18anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 184first strand
Strand 2
D
152 157parallel
Strand 3
D
125 130parallel
Strand 4
D
201 207parallel
Strand 5
D
226 230parallel
Strand 6
D
434 435anti-parallel
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