Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZ3 entry

There are 2 chains in PDB entry 3VZ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 454
B
 ALA 2LYS 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3VZ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 40Right-handed alpha
Helix 2
2
A
43 61Right-handed alpha
Helix 3
3
A
61 74Right-handed alpha
Helix 4
4
A
76 102Right-handed alpha
Helix 5
5
A
134 147Right-handed alpha
Helix 6
6
A
159 174Right-handed alpha
Helix 7
7
A
186 188Right-handed 310
Helix 8
8
A
189 196Right-handed alpha
Helix 9
9
A
207 221Right-handed alpha
Helix 10
10
A
242 256Right-handed alpha
Helix 11
11
A
257 260Right-handed 310
Helix 12
12
A
272 288Right-handed alpha
Helix 13
13
A
306 324Right-handed alpha
Helix 14
14
A
353 358Right-handed 310
Helix 15
15
A
372 382Right-handed alpha
Helix 16
16
A
395 406Right-handed alpha
Helix 17
17
A
428 430Right-handed 310
Helix 18
18
A
437 444Right-handed alpha
Helix 19
19
B
21 40Right-handed alpha
Helix 20
20
B
43 61Right-handed alpha
Helix 21
21
B
61 74Right-handed alpha
Helix 22
22
B
76 102Right-handed alpha
Helix 23
23
B
134 147Right-handed alpha
Helix 24
24
B
159 174Right-handed alpha
Helix 25
25
B
186 188Right-handed 310
Helix 26
26
B
189 196Right-handed alpha
Helix 27
27
B
207 221Right-handed alpha
Helix 28
28
B
242 256Right-handed alpha
Helix 29
29
B
257 260Right-handed 310
Helix 30
30
B
272 288Right-handed alpha
Helix 31
31
B
306 324Right-handed alpha
Helix 32
32
B
353 358Right-handed 310
Helix 33
33
B
372 382Right-handed alpha
Helix 34
34
B
395 406Right-handed alpha
Helix 35
35
B
428 430Right-handed 310
Helix 36
36
B
437 444Right-handed alpha
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There are 8 sheets in PDB entry 3VZ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
13 16anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
446 453anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
150 154parallel
Strand 3
A
123 127parallel
Strand 4
A
199 205parallel
Strand 5
A
225 228parallel
Strand 6
A
432 433anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
344 347anti-parallel
Strand 3
A
364 370parallel
Strand 4
A
267 271parallel
Strand 5
A
234 237parallel
Strand 6
A
388 392parallel
Strand 7
A
410 413parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
13 16anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
113 120anti-parallel
Strand 3
B
446 453anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
150 154parallel
Strand 3
B
123 127parallel
Strand 4
B
199 205parallel
Strand 5
B
225 228parallel
Strand 6
B
432 433anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
344 347anti-parallel
Strand 3
B
364 370parallel
Strand 4
B
267 271parallel
Strand 5
B
234 237parallel
Strand 6
B
388 392parallel
Strand 7
B
410 413parallel
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