Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZ8 entry

There are 3 chains in PDB entry 3VZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 192VAL 376
B
 GLY 192VAL 376
C
 GLY 192VAL 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3VZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
201 205Right-handed 310
Helix 2
2
A
207 210Right-handed 310
Helix 3
3
A
229 232Right-handed 310
Helix 4
4
A
233 244Right-handed alpha
Helix 5
5
A
255 268Right-handed alpha
Helix 6
6
A
281 297Right-handed alpha
Helix 7
7
A
308 312Right-handed 310
Helix 8
8
A
313 317Right-handed 310
Helix 9
9
A
338 356Right-handed alpha
Helix 10
10
A
358 376Right-handed alpha
Helix 11
11
B
201 205Right-handed 310
Helix 12
12
B
207 211Right-handed 310
Helix 13
13
B
229 244Right-handed alpha
Helix 14
14
B
255 268Right-handed alpha
Helix 15
15
B
281 297Right-handed alpha
Helix 16
16
B
313 317Right-handed 310
Helix 17
17
B
338 356Right-handed alpha
Helix 18
18
B
358 375Right-handed alpha
Helix 19
19
C
201 205Right-handed 310
Helix 20
20
C
207 211Right-handed 310
Helix 21
21
C
229 244Right-handed alpha
Helix 22
22
C
255 268Right-handed alpha
Helix 23
23
C
281 297Right-handed alpha
Helix 24
24
C
308 312Right-handed 310
Helix 25
25
C
313 317Right-handed 310
Helix 26
26
C
338 355Right-handed alpha
Helix 27
27
C
358 374Right-handed alpha
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There are 6 sheets in PDB entry 3VZ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
318 326anti-parallel
Strand 4
A
219 227anti-parallel
Strand 5
A
247 254parallel
Strand 6
A
273 277parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
318 326anti-parallel
Strand 3
A
219 227anti-parallel
Strand 4
A
300 301parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
330 335anti-parallel
Strand 3
B
318 325anti-parallel
Strand 4
B
219 227anti-parallel
Strand 5
B
247 254parallel
Strand 6
B
273 277parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
318 325anti-parallel
Strand 3
B
219 227anti-parallel
Strand 4
B
300 301parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 195first strand
Strand 2
C
330 335anti-parallel
Strand 3
C
318 325anti-parallel
Strand 4
C
219 227anti-parallel
Strand 5
C
247 254parallel
Strand 6
C
273 277parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 216first strand
Strand 2
C
318 325anti-parallel
Strand 3
C
219 227anti-parallel
Strand 4
C
300 301parallel
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