Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZA entry

There are 6 chains in PDB entry 3VZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 134GLN 232
D
 ALA 134TRP 195
A
 ARG 134LYS 231
C
 ALA 134TRP 195
E
 ASN 63GLN 93
F
 ASN 63GLN 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3VZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
134 150Right-handed alpha
Helix 2
2
B
200 212Right-handed alpha
Helix 3
3
B
213 229Right-handed alpha
Helix 4
4
D
135 146Right-handed alpha
Helix 5
5
D
176 178Right-handed 310
Helix 6
6
D
179 190Right-handed alpha
Helix 7
7
A
135 150Right-handed alpha
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
213 229Right-handed alpha
Helix 10
10
C
135 146Right-handed alpha
Helix 11
11
C
176 178Right-handed 310
Helix 12
12
C
179 190Right-handed alpha
Helix 13
13
E
65 71Right-handed alpha
Helix 14
14
E
72 84Right-handed alpha
Helix 15
15
F
65 71Right-handed alpha
Helix 16
16
F
72 84Right-handed alpha
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There are 4 sheets in PDB entry 3VZA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 156first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
177 183anti-parallel
Strand 4
B
189 195anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 149first strand
Strand 2
D
157 162anti-parallel
Strand 3
D
169 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
189 195anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
157 162anti-parallel
Strand 3
C
169 174anti-parallel
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