Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZC entry

There are 6 chains in PDB entry 3VZC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 6GLY 364
B
GLY 9GLY 364
C
MET 6GLY 364
D
MET 6GLY 364
E
SER 8GLY 364
F
MET 6GLY 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 3VZC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 38Right-handed alpha
Helix 2
2
A
38 45Right-handed alpha
Helix 3
3
A
58 67Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
80 93Right-handed alpha
Helix 6
6
A
96 101Right-handed alpha
Helix 7
7
A
114 124Right-handed alpha
Helix 8
8
A
130 145Right-handed alpha
Helix 9
9
A
173 181Right-handed alpha
Helix 10
10
A
191 200Right-handed alpha
Helix 11
11
A
295 306Right-handed alpha
Helix 12
12
A
307 309Right-handed 310
Helix 13
13
A
310 315Right-handed 310
Helix 14
14
B
24 29Right-handed alpha
Helix 15
15
B
29 38Right-handed alpha
Helix 16
16
B
38 45Right-handed alpha
Helix 17
17
B
58 67Right-handed alpha
Helix 18
18
B
68 72Right-handed 310
Helix 19
19
B
80 93Right-handed alpha
Helix 20
20
B
96 101Right-handed alpha
Helix 21
21
B
114 124Right-handed alpha
Helix 22
22
B
130 145Right-handed alpha
Helix 23
23
B
173 180Right-handed alpha
Helix 24
24
B
191 202Right-handed alpha
Helix 25
25
B
295 307Right-handed alpha
Helix 26
26
B
308 309Right-handed 310
Helix 27
27
B
310 314Right-handed 310
Helix 28
28
C
29 38Right-handed alpha
Helix 29
29
C
38 45Right-handed alpha
Helix 30
30
C
58 67Right-handed alpha
Helix 31
31
C
68 72Right-handed 310
Helix 32
32
C
80 93Right-handed alpha
Helix 33
33
C
96 101Right-handed alpha
Helix 34
34
C
114 124Right-handed alpha
Helix 35
35
C
130 144Right-handed alpha
Helix 36
36
C
173 181Right-handed alpha
Helix 37
37
C
191 202Right-handed alpha
Helix 38
38
C
295 306Right-handed alpha
Helix 39
39
C
307 309Right-handed 310
Helix 40
40
C
311 315Right-handed 310
Helix 41
41
D
24 29Right-handed alpha
Helix 42
42
D
29 38Right-handed alpha
Helix 43
43
D
38 45Right-handed alpha
Helix 44
44
D
58 67Right-handed alpha
Helix 45
45
D
68 72Right-handed 310
Helix 46
46
D
80 93Right-handed alpha
Helix 47
47
D
96 101Right-handed alpha
Helix 48
48
D
114 124Right-handed alpha
Helix 49
49
D
130 145Right-handed alpha
Helix 50
50
D
173 180Right-handed alpha
Helix 51
51
D
191 202Right-handed alpha
Helix 52
52
D
216 218Right-handed 310
Helix 53
53
D
295 306Right-handed alpha
Helix 54
54
D
307 309Right-handed 310
Helix 55
55
D
310 315Right-handed 310
Helix 56
56
E
29 38Right-handed alpha
Helix 57
57
E
38 45Right-handed alpha
Helix 58
58
E
58 67Right-handed alpha
Helix 59
59
E
68 72Right-handed 310
Helix 60
60
E
80 93Right-handed alpha
Helix 61
61
E
96 101Right-handed alpha
Helix 62
62
E
114 124Right-handed alpha
Helix 63
63
E
130 145Right-handed alpha
Helix 64
64
E
173 181Right-handed alpha
Helix 65
65
E
191 202Right-handed alpha
Helix 66
66
E
295 306Right-handed alpha
Helix 67
67
E
307 309Right-handed 310
Helix 68
68
E
310 314Right-handed 310
Helix 69
69
F
29 37Right-handed alpha
Helix 70
70
F
37 45Right-handed alpha
Helix 71
71
F
58 67Right-handed alpha
Helix 72
72
F
68 72Right-handed 310
Helix 73
73
F
80 93Right-handed alpha
Helix 74
74
F
96 101Right-handed alpha
Helix 75
75
F
114 124Right-handed alpha
Helix 76
76
F
130 145Right-handed alpha
Helix 77
77
F
173 180Right-handed alpha
Helix 78
78
F
191 202Right-handed alpha
Helix 79
79
F
295 306Right-handed alpha
Helix 80
80
F
311 315Right-handed 310
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There are 19 sheets in PDB entry 3VZC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 10first strand
Strand 2
A
146 157anti-parallel
Strand 3
A
350 362anti-parallel
Strand 4
A
319 330anti-parallel
Strand 5
A
285 291anti-parallel
Strand 6
A
256 263anti-parallel
Strand 7
A
168 172anti-parallel
Strand 8
A
336 340anti-parallel
Strand 9
A
343 347anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
146 157anti-parallel
Strand 3
A
350 362anti-parallel
Strand 4
A
319 330anti-parallel
Strand 5
A
209 214anti-parallel
Strand 6
A
250 251anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 251first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
319 330anti-parallel
Strand 4
A
285 291anti-parallel
Strand 5
A
256 263anti-parallel
Strand 6
A
206 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 53first strand
Strand 2
A
15 21parallel
Strand 3
A
74 79parallel
Strand 4
A
105 109parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 109first strand
Strand 2
B
74 79parallel
Strand 3
B
15 21parallel
Strand 4
B
47 53parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
15 21parallel
Strand 7
C
74 79parallel
Strand 8
C
105 109parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 165first strand
Strand 2
B
147 157anti-parallel
Strand 3
B
350 362anti-parallel
Strand 4
B
319 330anti-parallel
Strand 5
B
285 291anti-parallel
Strand 6
B
256 263anti-parallel
Strand 7
B
209 214first strand
Strand 8
B
250 251anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
206 207first strand
Strand 2
B
256 263anti-parallel
Strand 3
B
285 291anti-parallel
Strand 4
B
319 330anti-parallel
Strand 5
B
168 172first strand
Strand 6
B
336 340anti-parallel
Strand 7
B
343 347anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 165first strand
Strand 2
C
147 157anti-parallel
Strand 3
C
350 362anti-parallel
Strand 4
C
319 330anti-parallel
Strand 5
C
285 291anti-parallel
Strand 6
C
256 263anti-parallel
Strand 7
C
209 214first strand
Strand 8
C
250 251anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
206 207first strand
Strand 2
C
256 263anti-parallel
Strand 3
C
285 291anti-parallel
Strand 4
C
319 330anti-parallel
Strand 5
C
168 172first strand
Strand 6
C
336 340anti-parallel
Strand 7
C
343 347anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
9 10first strand
Strand 2
D
146 157anti-parallel
Strand 3
D
350 362anti-parallel
Strand 4
D
319 330anti-parallel
Strand 5
D
285 291anti-parallel
Strand 6
D
256 263anti-parallel
Strand 7
D
168 172anti-parallel
Strand 8
D
336 340anti-parallel
Strand 9
D
343 347anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
162 165first strand
Strand 2
D
146 157anti-parallel
Strand 3
D
350 362anti-parallel
Strand 4
D
319 330anti-parallel
Strand 5
D
209 214anti-parallel
Strand 6
D
250 251anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
250 251first strand
Strand 2
D
209 214anti-parallel
Strand 3
D
319 330anti-parallel
Strand 4
D
285 291anti-parallel
Strand 5
D
256 263anti-parallel
Strand 6
D
206 207anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
47 53first strand
Strand 2
D
15 21parallel
Strand 3
D
74 79parallel
Strand 4
D
105 109parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
47 53first strand
Strand 2
E
15 21parallel
Strand 3
E
74 79parallel
Strand 4
E
105 109parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
162 165first strand
Strand 2
E
147 157anti-parallel
Strand 3
E
350 362anti-parallel
Strand 4
E
319 330anti-parallel
Strand 5
E
285 291anti-parallel
Strand 6
E
256 263anti-parallel
Strand 7
E
209 214first strand
Strand 8
E
250 251anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
206 207first strand
Strand 2
E
256 263anti-parallel
Strand 3
E
285 291anti-parallel
Strand 4
E
319 330anti-parallel
Strand 5
E
168 172first strand
Strand 6
E
336 340anti-parallel
Strand 7
E
343 347anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
47 53first strand
Strand 2
F
15 21parallel
Strand 3
F
74 79parallel
Strand 4
F
105 109parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
162 165first strand
Strand 2
F
147 157anti-parallel
Strand 3
F
350 362anti-parallel
Strand 4
F
319 330anti-parallel
Strand 5
F
285 291anti-parallel
Strand 6
F
256 263anti-parallel
Strand 7
F
209 214first strand
Strand 8
F
250 251anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
206 207first strand
Strand 2
F
256 263anti-parallel
Strand 3
F
285 291anti-parallel
Strand 4
F
319 330anti-parallel
Strand 5
F
168 172first strand
Strand 6
F
336 340anti-parallel
Strand 7
F
343 347anti-parallel
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