Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZI entry

There are 2 chains in PDB entry 3VZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 222
B
 HIS 0VAL 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3VZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 44Right-handed alpha
Helix 2
2
A
77 87Right-handed alpha
Helix 3
3
A
89 102Right-handed alpha
Helix 4
4
A
131 145Right-handed alpha
Helix 5
5
B
32 44Right-handed alpha
Helix 6
6
B
79 87Right-handed alpha
Helix 7
7
B
90 101Right-handed alpha
Helix 8
8
B
131 145Right-handed alpha
Helix 9
9
B
176 180Right-handed 310
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There are 5 sheets in PDB entry 3VZI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
106 122parallel
Strand 3
A
5 14anti-parallel
Strand 4
A
162 165anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
106 122anti-parallel
Strand 3
A
49 58anti-parallel
Strand 4
A
211 213anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 192first strand
Strand 2
A
200 208anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
106 122parallel
Strand 3
B
5 14anti-parallel
Strand 4
B
162 165anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
106 122anti-parallel
Strand 3
B
49 58anti-parallel
Strand 4
B
211 213anti-parallel
Strand 5
B
200 208anti-parallel
Strand 6
B
182 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il