Analysis of interatomic Contacts of Structural Units in PDB entry:
3VZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VZP entry

There are 4 chains in PDB entry 3VZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 246
B
 HIS -2GLY 246
C
 GLN 3GLY 246
D
 HIS -2GLY 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3VZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
40 51Right-handed alpha
Helix 3
3
A
64 79Right-handed alpha
Helix 4
4
A
96 100Right-handed 310
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
113 131Right-handed alpha
Helix 7
7
A
140 146Right-handed alpha
Helix 8
8
A
150 172Right-handed alpha
Helix 9
9
A
188 193Right-handed alpha
Helix 10
10
A
195 206Right-handed alpha
Helix 11
11
A
213 226Right-handed alpha
Helix 12
12
A
227 230Right-handed 310
Helix 13
13
B
13 26Right-handed alpha
Helix 14
14
B
40 51Right-handed alpha
Helix 15
15
B
64 79Right-handed alpha
Helix 16
16
B
96 100Right-handed 310
Helix 17
17
B
101 113Right-handed alpha
Helix 18
18
B
113 122Right-handed alpha
Helix 19
19
B
123 131Right-handed alpha
Helix 20
20
B
140 146Right-handed alpha
Helix 21
21
B
150 172Right-handed alpha
Helix 22
22
B
188 193Right-handed alpha
Helix 23
23
B
195 206Right-handed alpha
Helix 24
24
B
213 226Right-handed alpha
Helix 25
25
B
227 230Right-handed 310
Helix 26
26
C
13 26Right-handed alpha
Helix 27
27
C
40 51Right-handed alpha
Helix 28
28
C
64 79Right-handed alpha
Helix 29
29
C
96 100Right-handed 310
Helix 30
30
C
101 113Right-handed alpha
Helix 31
31
C
113 131Right-handed alpha
Helix 32
32
C
140 146Right-handed alpha
Helix 33
33
C
150 172Right-handed alpha
Helix 34
34
C
188 193Right-handed alpha
Helix 35
35
C
195 206Right-handed alpha
Helix 36
36
C
213 226Right-handed alpha
Helix 37
37
C
227 230Right-handed 310
Helix 38
38
D
13 26Right-handed alpha
Helix 39
39
D
40 51Right-handed alpha
Helix 40
40
D
64 79Right-handed alpha
Helix 41
41
D
96 100Right-handed 310
Helix 42
42
D
101 113Right-handed alpha
Helix 43
43
D
113 121Right-handed alpha
Helix 44
44
D
123 131Right-handed alpha
Helix 45
45
D
140 146Right-handed alpha
Helix 46
46
D
150 172Right-handed alpha
Helix 47
47
D
188 193Right-handed alpha
Helix 48
48
D
195 205Right-handed alpha
Helix 49
49
D
213 226Right-handed alpha
Helix 50
50
D
227 230Right-handed 310
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There are 4 sheets in PDB entry 3VZP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
29 34parallel
Strand 3
A
5 8parallel
Strand 4
A
82 87parallel
Strand 5
A
133 138parallel
Strand 6
A
176 183parallel
Strand 7
A
236 239parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
29 34parallel
Strand 3
B
5 8parallel
Strand 4
B
84 87parallel
Strand 5
B
133 138parallel
Strand 6
B
176 183parallel
Strand 7
B
236 239parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
29 34parallel
Strand 3
C
5 8parallel
Strand 4
C
82 87parallel
Strand 5
C
133 138parallel
Strand 6
C
176 183parallel
Strand 7
C
236 239parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 59first strand
Strand 2
D
29 34parallel
Strand 3
D
5 8parallel
Strand 4
D
84 87parallel
Strand 5
D
133 138parallel
Strand 6
D
176 183parallel
Strand 7
D
236 239parallel
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