Analysis of interatomic Contacts of Structural Units in PDB entry:
3W00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W00 entry

There are 2 chains in PDB entry 3W00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 226
B
 TYR 2GLY 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3W00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
22 29Right-handed alpha
Helix 3
3
A
44 56Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
104 110Right-handed alpha
Helix 7
7
A
125 132Right-handed alpha
Helix 8
8
A
138 152Right-handed alpha
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
191 199Right-handed alpha
Helix 11
11
A
209 214Right-handed alpha
Helix 12
12
A
214 219Right-handed alpha
Helix 13
13
A
220 226Right-handed 310
Helix 14
14
B
3 7Right-handed 310
Helix 15
15
B
20 29Right-handed alpha
Helix 16
16
B
44 56Right-handed alpha
Helix 17
17
B
68 72Right-handed 310
Helix 18
18
B
94 105Right-handed alpha
Helix 19
19
B
106 110Right-handed 310
Helix 20
20
B
125 131Right-handed alpha
Helix 21
21
B
138 153Right-handed alpha
Helix 22
22
B
167 178Right-handed alpha
Helix 23
23
B
191 200Right-handed alpha
Helix 24
24
B
209 214Right-handed alpha
Helix 25
25
B
214 219Right-handed alpha
Helix 26
26
B
219 227Right-handed alpha
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There are 2 sheets in PDB entry 3W00. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
34 37parallel
Strand 3
A
62 65parallel
Strand 4
A
78 84parallel
Strand 5
A
113 120parallel
Strand 6
A
156 160parallel
Strand 7
A
182 186parallel
Strand 8
A
204 207parallel
Strand 9
A
9 13parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
34 37parallel
Strand 3
B
62 65parallel
Strand 4
B
78 84parallel
Strand 5
B
112 120parallel
Strand 6
B
156 160parallel
Strand 7
B
182 186parallel
Strand 8
B
204 207parallel
Strand 9
B
9 13parallel
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