Analysis of interatomic Contacts of Structural Units in PDB entry:
3W08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W08 entry

There are 2 chains in PDB entry 3W08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 351
B
 MET 1PRO 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3W08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
52 54Right-handed 310
Helix 3
3
A
55 70Right-handed alpha
Helix 4
4
A
101 111Right-handed alpha
Helix 5
5
A
111 120Right-handed alpha
Helix 6
6
A
121 126Right-handed 310
Helix 7
7
A
138 140Right-handed 310
Helix 8
8
A
153 159Right-handed 310
Helix 9
9
A
173 179Right-handed alpha
Helix 10
10
A
180 184Right-handed 310
Helix 11
11
A
199 203Right-handed 310
Helix 12
12
A
227 238Right-handed alpha
Helix 13
13
A
238 253Right-handed alpha
Helix 14
14
A
254 256Right-handed 310
Helix 15
15
A
285 296Right-handed alpha
Helix 16
16
A
296 310Right-handed alpha
Helix 17
17
A
326 328Right-handed 310
Helix 18
18
A
341 345Right-handed 310
Helix 19
19
B
6 10Right-handed 310
Helix 20
20
B
52 54Right-handed 310
Helix 21
21
B
55 70Right-handed alpha
Helix 22
22
B
101 111Right-handed alpha
Helix 23
23
B
111 120Right-handed alpha
Helix 24
24
B
121 126Right-handed 310
Helix 25
25
B
138 140Right-handed 310
Helix 26
26
B
153 159Right-handed 310
Helix 27
27
B
173 179Right-handed alpha
Helix 28
28
B
180 184Right-handed 310
Helix 29
29
B
199 203Right-handed 310
Helix 30
30
B
227 238Right-handed alpha
Helix 31
31
B
238 253Right-handed alpha
Helix 32
32
B
254 256Right-handed 310
Helix 33
33
B
285 296Right-handed alpha
Helix 34
34
B
296 310Right-handed alpha
Helix 35
35
B
326 328Right-handed 310
Helix 36
36
B
341 345Right-handed 310
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There are 4 sheets in PDB entry 3W08. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
161 162anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
317 325anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
273 283anti-parallel
Strand 5
A
258 267anti-parallel
Strand 6
A
78 85anti-parallel
Strand 7
A
91 99anti-parallel
Strand 8
A
42 50anti-parallel
Strand 9
A
129 135anti-parallel
Strand 10
A
330 335anti-parallel
Strand 11
A
205 209anti-parallel
Strand 12
A
194 197anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
161 162anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
317 325anti-parallel
Strand 3
B
214 222anti-parallel
Strand 4
B
273 283anti-parallel
Strand 5
B
258 267anti-parallel
Strand 6
B
78 85anti-parallel
Strand 7
B
91 99anti-parallel
Strand 8
B
42 50anti-parallel
Strand 9
B
129 135anti-parallel
Strand 10
B
330 335anti-parallel
Strand 11
B
205 209anti-parallel
Strand 12
B
194 197anti-parallel
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