Analysis of interatomic Contacts of Structural Units in PDB entry:
3W0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W0K entry

There are 2 chains in PDB entry 3W0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 330
B
 MET 1VAL 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3W0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
58 60Right-handed 310
Helix 4
4
A
61 75Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
104 122Right-handed alpha
Helix 7
7
A
147 166Right-handed alpha
Helix 8
8
A
175 180Right-handed alpha
Helix 9
9
A
183 190Right-handed 310
Helix 10
10
A
200 205Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
233 250Right-handed alpha
Helix 13
13
A
266 285Right-handed alpha
Helix 14
14
A
318 328Right-handed alpha
Helix 15
15
B
24 34Right-handed alpha
Helix 16
16
B
46 48Right-handed 310
Helix 17
17
B
58 60Right-handed 310
Helix 18
18
B
61 75Right-handed alpha
Helix 19
19
B
93 97Right-handed 310
Helix 20
20
B
104 122Right-handed alpha
Helix 21
21
B
147 166Right-handed alpha
Helix 22
22
B
175 180Right-handed alpha
Helix 23
23
B
183 190Right-handed 310
Helix 24
24
B
200 205Right-handed alpha
Helix 25
25
B
233 249Right-handed alpha
Helix 26
26
B
266 285Right-handed alpha
Helix 27
27
B
318 328Right-handed alpha
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There are 6 sheets in PDB entry 3W0K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
38 44parallel
Strand 3
A
78 85parallel
Strand 4
A
130 133parallel
Strand 5
A
170 174parallel
Strand 6
A
192 197parallel
Strand 7
A
254 259parallel
Strand 8
A
288 290parallel
Strand 9
A
4 7parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
230 232anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
315 317anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
38 44parallel
Strand 3
B
78 85parallel
Strand 4
B
130 133parallel
Strand 5
B
170 174parallel
Strand 6
B
192 197parallel
Strand 7
B
254 259parallel
Strand 8
B
288 290parallel
Strand 9
B
4 7parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
230 232anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
315 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il