Analysis of interatomic Contacts of Structural Units in PDB entry:
3W0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W0Q entry

There is 1 chain in PDB entry 3W0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8THR 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3W0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
54 68Right-handed alpha
Helix 3
3
A
104 110Right-handed 310
Helix 4
4
A
111 125Right-handed alpha
Helix 5
5
A
146 153Right-handed alpha
Helix 6
6
A
154 156Right-handed 310
Helix 7
7
A
161 165Right-handed 310
Helix 8
8
A
167 185Right-handed alpha
Helix 9
9
A
186 188Right-handed 310
Helix 10
10
A
225 235Right-handed alpha
Helix 11
11
A
239 253Right-handed alpha
Helix 12
12
A
253 258Right-handed alpha
Helix 13
13
A
259 281Right-handed alpha
Helix 14
14
A
282 301Right-handed alpha
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There are 3 sheets in PDB entry 3W0Q. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 51anti-parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
77 82anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
210 214anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
221 223anti-parallel
Strand 4
A
193 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il