Analysis of interatomic Contacts of Structural Units in PDB entry:
3W11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W11 entry

There are 6 chains in PDB entry 3W11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 21
B
 CYS 7GLU 21
C
 GLN 1SER 118
D
 ASP 1ALA 114
E
 GLY 5LYS 310
F
 PHE 705VAL 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3W11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
12 20Right-handed alpha
Helix 3
3
B
8 20Right-handed alpha
Helix 4
4
C
73 75Right-handed 310
Helix 5
5
C
86 90Right-handed 310
Helix 6
6
D
85 89Right-handed 310
Helix 7
7
E
17 24Right-handed 310
Helix 8
8
E
42 46Right-handed 310
Helix 9
9
E
132 136Right-handed 310
Helix 10
10
E
150 152Right-handed 310
Helix 11
11
E
193 200Right-handed 310
Helix 12
12
E
256 264Right-handed alpha
Helix 13
13
F
706 714Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3W11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
112 116parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
76 81anti-parallel
Strand 4
D
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
107 111parallel
Strand 3
D
91 96anti-parallel
Strand 4
D
39 44anti-parallel
Strand 5
D
51 55anti-parallel
Strand 6
D
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
107 111parallel
Strand 3
D
91 96anti-parallel
Strand 4
D
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 14first strand
Strand 2
E
28 38parallel
Strand 3
E
56 57parallel
Strand 4
E
81 82parallel
Strand 5
E
111 112parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 14first strand
Strand 2
E
28 38parallel
Strand 3
E
61 66parallel
Strand 4
E
91 96parallel
Strand 5
E
116 122parallel
Strand 6
E
144 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 173first strand
Strand 2
E
178 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 184first strand
Strand 2
E
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 233first strand
Strand 2
E
236 238anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
252 255first strand
Strand 2
E
245 248anti-parallel
Strand 3
E
283 285parallel
Strand 4
E
278 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
292 294first strand
Strand 2
E
301 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il