Analysis of interatomic Contacts of Structural Units in PDB entry:
3W1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W1V entry

There are 2 chains in PDB entry 3W1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8LYS 338
B
 GLY -8TYR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3W1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
85 92Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
101 114Right-handed alpha
Helix 7
7
A
126 128Right-handed 310
Helix 8
8
A
132 150Right-handed alpha
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
201 216Right-handed alpha
Helix 11
11
A
231 242Right-handed alpha
Helix 12
12
A
265 272Right-handed alpha
Helix 13
13
A
290 295Right-handed alpha
Helix 14
14
A
298 303Right-handed alpha
Helix 15
15
A
316 326Right-handed alpha
Helix 16
16
A
327 338Right-handed alpha
Helix 17
17
B
14 26Right-handed alpha
Helix 18
18
B
38 50Right-handed alpha
Helix 19
19
B
63 72Right-handed alpha
Helix 20
20
B
85 92Right-handed alpha
Helix 21
21
B
92 101Right-handed alpha
Helix 22
22
B
101 114Right-handed alpha
Helix 23
23
B
126 128Right-handed 310
Helix 24
24
B
132 149Right-handed alpha
Helix 25
25
B
173 184Right-handed alpha
Helix 26
26
B
201 216Right-handed alpha
Helix 27
27
B
231 242Right-handed alpha
Helix 28
28
B
265 272Right-handed alpha
Helix 29
29
B
290 295Right-handed alpha
Helix 30
30
B
298 304Right-handed alpha
Helix 31
31
B
316 325Right-handed alpha
Helix 32
32
B
327 336Right-handed alpha
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There are 8 sheets in PDB entry 3W1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
31 36parallel
Strand 3
A
6 10parallel
Strand 4
A
76 79parallel
Strand 5
A
118 124parallel
Strand 6
A
158 164parallel
Strand 7
A
221 224parallel
Strand 8
A
278 281anti-parallel
Strand 9
A
273 274anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
248 250parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
228 230anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
307 308anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
31 36parallel
Strand 3
B
6 10parallel
Strand 4
B
76 79parallel
Strand 5
B
118 124parallel
Strand 6
B
158 164parallel
Strand 7
B
221 224parallel
Strand 8
B
278 281anti-parallel
Strand 9
B
273 274anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
248 250parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
228 230anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
307 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il