Analysis of interatomic Contacts of Structural Units in PDB entry:
3W35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W35 entry

There are 2 chains in PDB entry 3W35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 56GLY 523
B
 PHE 56VAL 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3W35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 67Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
87 107Right-handed alpha
Helix 4
4
A
108 110Right-handed 310
Helix 5
5
A
124 129Right-handed 310
Helix 6
6
A
131 150Right-handed alpha
Helix 7
7
A
154 163Right-handed alpha
Helix 8
8
A
177 194Right-handed alpha
Helix 9
9
A
263 269Right-handed 310
Helix 10
10
A
276 280Right-handed 310
Helix 11
11
A
285 289Right-handed 310
Helix 12
12
A
292 309Right-handed alpha
Helix 13
13
A
311 323Right-handed alpha
Helix 14
14
A
323 339Right-handed alpha
Helix 15
15
A
346 376Right-handed alpha
Helix 16
16
A
379 389Right-handed alpha
Helix 17
17
A
409 411Right-handed 310
Helix 18
18
A
425 443Right-handed alpha
Helix 19
19
A
477 491Right-handed alpha
Helix 20
20
A
495 523Right-handed alpha
Helix 21
21
B
62 67Right-handed alpha
Helix 22
22
B
87 107Right-handed alpha
Helix 23
23
B
108 110Right-handed 310
Helix 24
24
B
124 129Right-handed 310
Helix 25
25
B
131 150Right-handed alpha
Helix 26
26
B
153 163Right-handed alpha
Helix 27
27
B
177 194Right-handed alpha
Helix 28
28
B
263 269Right-handed 310
Helix 29
29
B
276 280Right-handed 310
Helix 30
30
B
285 289Right-handed 310
Helix 31
31
B
292 310Right-handed alpha
Helix 32
32
B
311 323Right-handed alpha
Helix 33
33
B
323 340Right-handed alpha
Helix 34
34
B
346 376Right-handed alpha
Helix 35
35
B
379 389Right-handed alpha
Helix 36
36
B
425 443Right-handed alpha
Helix 37
37
B
477 491Right-handed alpha
Helix 38
38
B
495 523Right-handed alpha
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There are 5 sheets in PDB entry 3W35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
256 259anti-parallel
Strand 3
B
256 259anti-parallel
Strand 4
B
238 240anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
403 407anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 453first strand
Strand 2
A
470 476anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 396first strand
Strand 2
B
403 407anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 453first strand
Strand 2
B
470 476anti-parallel
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