Analysis of interatomic Contacts of Structural Units in PDB entry:
3W4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3W4J entry

There are 4 chains in PDB entry 3W4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 340
B	MET 1	SER 340
C	MET 1	SER 340
D	MET 1	SER 340

There are 49 helices in PDB entry 3W4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	24	Right-handed alpha
Helix 2	2	A	43	48	Right-handed alpha
Helix 3	3	A	62	77	Right-handed alpha
Helix 4	4	A	83	88	Right-handed alpha
Helix 5	5	A	118	124	Right-handed alpha
Helix 6	6	A	140	155	Right-handed alpha
Helix 7	7	A	166	174	Right-handed alpha
Helix 8	8	A	182	190	Right-handed 310
Helix 9	9	A	252	267	Right-handed alpha
Helix 10	10	A	268	273	Right-handed 310
Helix 11	11	A	311	313	Right-handed 310
Helix 12	12	A	314	337	Right-handed alpha
Helix 13	13	B	9	24	Right-handed alpha
Helix 14	14	B	43	48	Right-handed 310
Helix 15	15	B	62	77	Right-handed alpha
Helix 16	16	B	83	88	Right-handed alpha
Helix 17	17	B	118	124	Right-handed alpha
Helix 18	18	B	140	154	Right-handed alpha
Helix 19	19	B	166	174	Right-handed alpha
Helix 20	20	B	182	189	Right-handed 310
Helix 21	21	B	252	267	Right-handed alpha
Helix 22	22	B	268	271	Right-handed 310
Helix 23	23	B	311	313	Right-handed 310
Helix 24	24	B	314	337	Right-handed alpha
Helix 25	25	C	9	21	Right-handed alpha
Helix 26	26	C	43	48	Right-handed alpha
Helix 27	27	C	62	77	Right-handed alpha
Helix 28	28	C	83	88	Right-handed alpha
Helix 29	29	C	105	110	Right-handed 310
Helix 30	30	C	118	124	Right-handed alpha
Helix 31	31	C	140	155	Right-handed alpha
Helix 32	32	C	166	173	Right-handed alpha
Helix 33	33	C	182	189	Right-handed 310
Helix 34	34	C	252	267	Right-handed alpha
Helix 35	35	C	268	273	Right-handed 310
Helix 36	36	C	311	313	Right-handed 310
Helix 37	37	C	314	336	Right-handed alpha
Helix 38	38	D	9	24	Right-handed alpha
Helix 39	39	D	43	48	Right-handed alpha
Helix 40	40	D	61	77	Right-handed alpha
Helix 41	41	D	83	88	Right-handed alpha
Helix 42	42	D	105	110	Right-handed 310
Helix 43	43	D	118	124	Right-handed alpha
Helix 44	44	D	140	154	Right-handed alpha
Helix 45	45	D	166	173	Right-handed alpha
Helix 46	46	D	182	189	Right-handed 310
Helix 47	47	D	252	267	Right-handed alpha
Helix 48	48	D	268	273	Right-handed 310
Helix 49	49	D	314	338	Right-handed alpha

There are 12 sheets in PDB entry 3W4J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	31	36	parallel
Strand 3	A	2	6	parallel
Strand 4	A	177	180	parallel
Strand 5	A	303	309	parallel
Strand 6	A	290	296	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	212	216	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	243	244	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	212	216	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	274	285	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	31	36	parallel
Strand 3	B	2	6	parallel
Strand 4	B	177	180	parallel
Strand 5	B	303	309	parallel
Strand 6	B	290	296	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	213	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	243	244	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	213	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	274	285	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	31	36	parallel
Strand 3	C	2	6	parallel
Strand 4	C	177	180	parallel
Strand 5	C	303	309	parallel
Strand 6	C	290	296	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	89	97	anti-parallel
Strand 4	C	213	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	239	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	243	244	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	89	97	anti-parallel
Strand 4	C	213	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	239	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	274	285	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	31	36	parallel
Strand 3	D	2	6	parallel
Strand 4	D	177	180	parallel
Strand 5	D	303	309	parallel
Strand 6	D	290	296	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	139	first strand
Strand 2	D	89	98	anti-parallel
Strand 3	D	212	216	parallel
Strand 4	D	228	231	anti-parallel
Strand 5	D	236	239	anti-parallel
Strand 6	D	196	206	anti-parallel
Strand 7	D	243	244	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	139	first strand
Strand 2	D	89	98	anti-parallel
Strand 3	D	212	216	parallel
Strand 4	D	228	231	anti-parallel
Strand 5	D	236	239	anti-parallel
Strand 6	D	196	206	anti-parallel
Strand 7	D	274	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3W4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3W4J