Analysis of interatomic Contacts of Structural Units in PDB entry:
3W5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W5B entry

There is 1 chain in PDB entry 3W5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3W5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 17Right-handed alpha
Helix 3
3
A
25 36Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
59 75Right-handed alpha
Helix 6
6
A
84 121Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
177 182Right-handed alpha
Helix 9
9
A
247 275Right-handed alpha
Helix 10
10
A
281 285Right-handed 310
Helix 11
11
A
287 307Right-handed alpha
Helix 12
12
A
310 329Right-handed alpha
Helix 13
13
A
335 344Right-handed alpha
Helix 14
14
A
403 406Right-handed 310
Helix 15
15
A
407 420Right-handed alpha
Helix 16
16
A
439 453Right-handed alpha
Helix 17
17
A
466 468Right-handed 310
Helix 18
18
A
469 477Right-handed alpha
Helix 19
19
A
517 524Right-handed alpha
Helix 20
20
A
538 554Right-handed alpha
Helix 21
21
A
580 588Right-handed alpha
Helix 22
22
A
606 617Right-handed alpha
Helix 23
23
A
628 639Right-handed alpha
Helix 24
24
A
655 660Right-handed alpha
Helix 25
25
A
662 671Right-handed alpha
Helix 26
26
A
680 693Right-handed alpha
Helix 27
27
A
704 706Right-handed 310
Helix 28
28
A
707 714Right-handed alpha
Helix 29
29
A
724 729Right-handed alpha
Helix 30
30
A
739 781Right-handed alpha
Helix 31
31
A
788 800Right-handed alpha
Helix 32
32
A
804 810Right-handed 310
Helix 33
33
A
830 856Right-handed alpha
Helix 34
34
A
887 891Right-handed 310
Helix 35
35
A
896 915Right-handed alpha
Helix 36
36
A
926 929Right-handed 310
Helix 37
37
A
930 950Right-handed alpha
Helix 38
38
A
951 957Right-handed alpha
Helix 39
39
A
963 975Right-handed alpha
Helix 40
40
A
975 991Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3W5B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
127 130anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 351parallel
Strand 6
A
620 625parallel
Strand 7
A
675 677parallel
Strand 8
A
652 654parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il