Analysis of interatomic Contacts of Structural Units in PDB entry:
3W5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W5U entry

There are 8 chains in PDB entry 3W5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 19TYR 314
B
 ALA 1GLU 92
C
 CYS 19TYR 314
D
 ALA 1LEU 95
E
 CYS 19TYR 314
F
 ALA 1GLU 94
G
 CYS 19TYR 314
H
 ALA 1GLU 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3W5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 139Right-handed alpha
Helix 2
2
A
174 186Right-handed alpha
Helix 3
3
A
206 210Right-handed 310
Helix 4
4
A
212 223Right-handed alpha
Helix 5
5
A
246 252Right-handed alpha
Helix 6
6
A
254 262Right-handed alpha
Helix 7
7
A
276 291Right-handed alpha
Helix 8
8
A
295 305Right-handed alpha
Helix 9
9
B
23 31Right-handed alpha
Helix 10
10
B
65 71Right-handed alpha
Helix 11
11
C
130 139Right-handed alpha
Helix 12
12
C
174 186Right-handed alpha
Helix 13
13
C
206 210Right-handed 310
Helix 14
14
C
212 223Right-handed alpha
Helix 15
15
C
246 253Right-handed alpha
Helix 16
16
C
254 262Right-handed alpha
Helix 17
17
C
276 291Right-handed alpha
Helix 18
18
C
295 305Right-handed alpha
Helix 19
19
D
23 31Right-handed alpha
Helix 20
20
D
65 71Right-handed alpha
Helix 21
21
E
130 139Right-handed alpha
Helix 22
22
E
174 186Right-handed alpha
Helix 23
23
E
206 210Right-handed 310
Helix 24
24
E
212 223Right-handed alpha
Helix 25
25
E
246 253Right-handed alpha
Helix 26
26
E
254 262Right-handed alpha
Helix 27
27
E
276 291Right-handed alpha
Helix 28
28
E
295 306Right-handed alpha
Helix 29
29
F
23 31Right-handed alpha
Helix 30
30
F
65 71Right-handed alpha
Helix 31
31
G
130 139Right-handed alpha
Helix 32
32
G
174 186Right-handed alpha
Helix 33
33
G
206 210Right-handed 310
Helix 34
34
G
212 223Right-handed alpha
Helix 35
35
G
246 252Right-handed alpha
Helix 36
36
G
254 262Right-handed alpha
Helix 37
37
G
276 292Right-handed alpha
Helix 38
38
G
295 305Right-handed alpha
Helix 39
39
H
23 31Right-handed alpha
Helix 40
40
H
65 71Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 3W5U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
75 79anti-parallel
Strand 3
A
144 151anti-parallel
Strand 4
A
38 47anti-parallel
Strand 5
A
57 63anti-parallel
Strand 6
A
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
127 129anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 233first strand
Strand 2
A
197 204parallel
Strand 3
A
164 170parallel
Strand 4
A
267 274parallel
Strand 5
A
309 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
85 88parallel
Strand 4
B
48 53anti-parallel
Strand 5
B
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
75 79anti-parallel
Strand 3
C
144 151anti-parallel
Strand 4
C
38 47anti-parallel
Strand 5
C
57 63anti-parallel
Strand 6
C
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
127 129anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 233first strand
Strand 2
C
197 204parallel
Strand 3
C
164 170parallel
Strand 4
C
267 274parallel
Strand 5
C
309 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 19first strand
Strand 2
D
2 9anti-parallel
Strand 3
D
85 88parallel
Strand 4
D
48 53anti-parallel
Strand 5
D
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 96first strand
Strand 2
E
75 79anti-parallel
Strand 3
E
144 151anti-parallel
Strand 4
E
38 47anti-parallel
Strand 5
E
57 63anti-parallel
Strand 6
E
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 121first strand
Strand 2
E
127 129anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
227 233first strand
Strand 2
E
197 204parallel
Strand 3
E
164 170parallel
Strand 4
E
267 274parallel
Strand 5
E
309 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 19first strand
Strand 2
F
2 9anti-parallel
Strand 3
F
85 88parallel
Strand 4
F
48 53anti-parallel
Strand 5
F
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 57first strand
Strand 2
F
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
93 96first strand
Strand 2
G
75 79anti-parallel
Strand 3
G
144 151anti-parallel
Strand 4
G
38 47anti-parallel
Strand 5
G
57 63anti-parallel
Strand 6
G
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
119 121first strand
Strand 2
G
127 129anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
227 233first strand
Strand 2
G
197 204parallel
Strand 3
G
164 170parallel
Strand 4
G
267 274parallel
Strand 5
G
309 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 19first strand
Strand 2
H
2 9anti-parallel
Strand 3
H
85 88parallel
Strand 4
H
48 53anti-parallel
Strand 5
H
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
56 57first strand
Strand 2
H
80 81anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il