Analysis of interatomic Contacts of Structural Units in PDB entry:
3W5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W5V entry

There are 4 chains in PDB entry 3W5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18TYR 314
B
 ALA 1THR 96
C
 LYS 18TYR 314
D
 ALA 1THR 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3W5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 138Right-handed alpha
Helix 2
2
A
174 186Right-handed alpha
Helix 3
3
A
212 223Right-handed alpha
Helix 4
4
A
246 253Right-handed alpha
Helix 5
5
A
254 262Right-handed alpha
Helix 6
6
A
276 290Right-handed alpha
Helix 7
7
A
295 306Right-handed alpha
Helix 8
8
B
23 31Right-handed alpha
Helix 9
9
B
65 70Right-handed alpha
Helix 10
10
B
77 79Right-handed 310
Helix 11
11
B
91 96Right-handed alpha
Helix 12
12
C
130 138Right-handed alpha
Helix 13
13
C
174 186Right-handed alpha
Helix 14
14
C
212 223Right-handed alpha
Helix 15
15
C
246 253Right-handed alpha
Helix 16
16
C
254 262Right-handed alpha
Helix 17
17
C
276 290Right-handed alpha
Helix 18
18
C
295 306Right-handed alpha
Helix 19
19
D
23 31Right-handed alpha
Helix 20
20
D
65 71Right-handed alpha
Helix 21
21
D
77 79Right-handed 310
Helix 22
22
D
91 96Right-handed alpha
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There are 12 sheets in PDB entry 3W5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
75 79anti-parallel
Strand 6
A
93 96anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
110 116anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
127 129anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 233first strand
Strand 2
A
197 204parallel
Strand 3
A
164 170parallel
Strand 4
A
267 274parallel
Strand 5
A
309 314parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
85 88parallel
Strand 4
B
48 53anti-parallel
Strand 5
B
73 75anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
80 81anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
57 63anti-parallel
Strand 3
C
38 42anti-parallel
Strand 4
C
144 151anti-parallel
Strand 5
C
75 79anti-parallel
Strand 6
C
93 96anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
57 63anti-parallel
Strand 3
C
110 116anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
127 129anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 233first strand
Strand 2
C
197 204parallel
Strand 3
C
164 170parallel
Strand 4
C
267 274parallel
Strand 5
C
309 314parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 19first strand
Strand 2
D
2 9anti-parallel
Strand 3
D
85 89parallel
Strand 4
D
48 53anti-parallel
Strand 5
D
73 75anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
80 81anti-parallel
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