Analysis of interatomic Contacts of Structural Units in PDB entry:
3W6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3W6J entry

There are 6 chains in PDB entry 3W6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 173
B
 LYS 15TRP 182
C
 LEU 14PRO 180
D
 GLU 12MET 173
E
 LYS 15TRP 182
F
 ALA 13TRP 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3W6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
36 54Right-handed alpha
Helix 4
4
A
59 78Right-handed alpha
Helix 5
5
A
99 128Right-handed alpha
Helix 6
6
A
152 166Right-handed alpha
Helix 7
7
B
16 29Right-handed alpha
Helix 8
8
B
35 43Right-handed alpha
Helix 9
9
B
45 60Right-handed alpha
Helix 10
10
B
84 94Right-handed alpha
Helix 11
11
B
100 115Right-handed alpha
Helix 12
12
B
118 127Right-handed alpha
Helix 13
13
B
130 140Right-handed alpha
Helix 14
14
B
161 168Right-handed alpha
Helix 15
15
B
172 176Right-handed 310
Helix 16
16
C
15 29Right-handed alpha
Helix 17
17
C
30 32Right-handed 310
Helix 18
18
C
34 43Right-handed alpha
Helix 19
19
C
45 62Right-handed alpha
Helix 20
20
C
84 90Right-handed alpha
Helix 21
21
C
101 115Right-handed alpha
Helix 22
22
C
119 127Right-handed alpha
Helix 23
23
C
130 140Right-handed alpha
Helix 24
24
C
161 168Right-handed alpha
Helix 25
25
C
172 176Right-handed 310
Helix 26
26
D
16 28Right-handed alpha
Helix 27
27
D
36 52Right-handed alpha
Helix 28
28
D
59 78Right-handed alpha
Helix 29
29
D
99 128Right-handed alpha
Helix 30
30
D
137 141Right-handed 310
Helix 31
31
D
152 166Right-handed alpha
Helix 32
32
E
16 29Right-handed alpha
Helix 33
33
E
30 32Right-handed 310
Helix 34
34
E
34 43Right-handed alpha
Helix 35
35
E
45 60Right-handed alpha
Helix 36
36
E
84 92Right-handed alpha
Helix 37
37
E
101 115Right-handed alpha
Helix 38
38
E
119 127Right-handed alpha
Helix 39
39
E
130 140Right-handed alpha
Helix 40
40
E
163 168Right-handed alpha
Helix 41
41
F
14 29Right-handed alpha
Helix 42
42
F
30 32Right-handed 310
Helix 43
43
F
34 43Right-handed alpha
Helix 44
44
F
45 60Right-handed alpha
Helix 45
45
F
84 90Right-handed alpha
Helix 46
46
F
101 115Right-handed alpha
Helix 47
47
F
119 127Right-handed alpha
Helix 48
48
F
130 140Right-handed alpha
Helix 49
49
F
161 169Right-handed alpha
Helix 50
50
F
172 176Right-handed 310
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There are 10 sheets in PDB entry 3W6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
C
92 94anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
67 71anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 148first strand
Strand 2
B
156 160anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 72first strand
Strand 2
C
75 80anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
156 160anti-parallel
Strand 3
C
143 148anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 169first strand
Strand 2
F
92 94anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
67 72first strand
Strand 2
E
75 80anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 118first strand
Strand 2
E
156 160anti-parallel
Strand 3
E
143 148anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
67 72first strand
Strand 2
F
75 80anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
117 118first strand
Strand 2
F
156 160anti-parallel
Strand 3
F
143 148anti-parallel
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